Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 5.7e-153 544.3 284 100.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.9e-32 143.3 261 43.7
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.1e-31 141.4 285 41.8
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.6e-30 136.3 298 40.9
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 2.3e-29 133.7 265 42.6
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.5e-28 131.0 284 39.4
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.5e-28 131.0 284 39.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.9e-28 130.6 271 42.8
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.7e-28 129.0 261 42.1
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.3e-27 127.9 311 39.5
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.2e-27 127.1 295 41.0
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 8.2e-27 125.2 289 40.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 8.2e-27 125.2 284 40.8
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.4e-26 123.6 294 40.1
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-26 123.6 275 41.1
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 5.3e-26 122.5 300 38.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 5.3e-26 122.5 294 39.8
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 9.0e-26 121.7 286 39.5
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.2e-25 121.3 250 41.2
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.5e-25 120.9 257 41.2
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.6e-25 120.2 264 40.9
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.5e-25 119.4 299 39.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 4.5e-25 119.4 269 40.1
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 7.7e-25 118.6 277 38.3
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 7.7e-25 118.6 319 36.7
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.0e-24 118.2 321 38.0
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.0e-24 118.2 299 39.5
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.0e-24 118.2 264 42.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.7e-24 117.5 298 39.3
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.7e-24 117.5 312 38.5
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 2.2e-24 117.1 291 37.1
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.8e-24 116.3 264 41.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.0e-24 115.9 265 40.8
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 5.0e-24 115.9 299 38.5
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.0e-24 115.9 266 39.5
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.0e-24 115.9 268 38.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 5.0e-24 115.9 283 38.2
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 6.5e-24 115.5 270 39.6
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.5e-24 115.5 266 39.1
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 6.5e-24 115.5 324 34.9
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.5e-24 115.2 309 38.5
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 8.5e-24 115.2 260 42.3
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-23 114.8 264 40.9
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.4e-23 114.4 302 36.8
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.4e-23 114.4 291 38.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.4e-23 114.4 309 38.5
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.4e-23 114.4 332 36.1
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 2.5e-23 113.6 318 37.7
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 2.5e-23 113.6 259 37.8
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.2e-23 113.2 316 37.3
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 3.2e-23 113.2 313 38.0
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 7.2e-23 112.1 261 39.5
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 9.4e-23 111.7 257 37.0
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 9.4e-23 111.7 289 34.9
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.2e-22 111.3 310 37.7
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.2e-22 111.3 279 36.2
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.6e-22 110.9 288 38.9
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 2.1e-22 110.5 295 35.9
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.1e-22 110.5 247 38.5
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.7e-22 110.2 300 36.3
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.7e-22 110.2 253 38.3
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 2.7e-22 110.2 303 36.6
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.0e-21 108.2 270 37.8
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.4e-21 107.8 252 38.1
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.0e-21 106.7 291 37.1
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.0e-21 106.7 230 39.1
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.0e-21 106.7 287 38.0
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.0e-21 106.7 265 34.0
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 5.1e-21 105.9 278 39.2
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 6.7e-21 105.5 261 37.2
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.5e-20 104.4 302 36.4
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 4.3e-20 102.8 255 36.9
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 5.7e-20 102.4 315 35.9
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.4e-20 102.1 263 38.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.3e-19 101.3 267 37.5
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.3e-19 101.3 291 34.7
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.3e-19 101.3 259 37.5
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.2e-19 100.5 316 33.9
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 2.8e-19 100.1 267 35.2
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 8.2e-19 98.6 341 32.0
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.4e-18 97.8 228 36.4
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 9.1e-18 95.1 294 36.4
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-17 94.7 274 37.2
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 2.0e-17 94.0 257 36.2
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 5.9e-17 92.4 282 33.3
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 7.7e-17 92.0 241 34.9
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.3e-16 91.3 317 33.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 2.9e-16 90.1 271 33.9
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 8.5e-16 88.6 293 33.1
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.1e-15 88.2 288 33.0
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-15 87.8 269 34.6
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.9e-15 87.4 276 33.3
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.9e-15 87.4 277 32.5
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 2.5e-15 87.0 253 35.2
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 4.2e-15 86.3 335 31.3
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 4.2e-15 86.3 286 34.3
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 5.5e-15 85.9 324 32.7
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 7.2e-15 85.5 270 32.6
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 7.2e-15 85.5 288 32.6
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 9.4e-15 85.1 291 32.6
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 9.4e-15 85.1 287 33.8
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.6e-14 84.3 336 33.0
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.6e-14 84.3 270 33.7
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 2.1e-14 84.0 294 32.0
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 3.6e-14 83.2 315 34.0
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 4.7e-14 82.8 336 33.0
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 4.7e-14 82.8 336 33.0
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 4.7e-14 82.8 277 31.8
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 4.7e-14 82.8 238 34.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 4.7e-14 82.8 238 34.5
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.9e-14 82.0 305 32.8
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.0e-13 81.6 263 32.3
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.4e-13 81.3 311 32.2
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.4e-13 81.3 311 33.4
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 3.9e-13 79.7 242 34.7
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 8.8e-13 78.6 323 30.7
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 8.8e-13 78.6 335 32.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 8.8e-13 78.6 335 32.5
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 8.8e-13 78.6 335 32.5
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.1e-12 78.2 300 33.0
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-12 78.2 134 43.3
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-12 77.8 367 30.0
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 2.0e-12 77.4 335 32.8
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 2.0e-12 77.4 118 47.5
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.6e-12 77.0 262 32.4
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.3e-12 76.6 271 33.6
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 7.4e-12 75.5 304 28.6
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.3e-11 74.7 131 45.8
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.3e-11 74.7 258 33.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.7e-11 74.3 258 32.6
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.7e-11 74.3 269 30.5
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.7e-11 73.2 228 32.9
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.1e-10 71.6 277 33.2
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.4e-10 71.2 252 34.9
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.4e-10 70.5 333 30.0
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 3.1e-10 70.1 265 30.9
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.0e-09 67.4 339 31.3
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.6e-09 67.0 315 30.8
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 4.5e-09 66.2 215 33.5
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 5.9e-09 65.9 77 54.5
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 7.7e-09 65.5 250 29.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.3e-08 64.7 296 30.1
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.3e-08 64.7 321 30.8
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.3e-08 64.7 243 32.5
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.7e-08 64.3 187 34.8
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 2.9e-08 63.5 260 30.0
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.7e-06 57.0 127 33.9
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.7e-06 56.2 259 27.8
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 6.1e-06 55.8 298 29.2
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 8.0e-06 55.5 75 49.3
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 8.0e-06 55.5 184 33.7


User provided reference genes

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