Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.8e-156 555.8 266 100.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.6e-78 295.0 148 94.6
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 9.6e-62 241.1 152 77.0
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.2e-61 238.4 160 71.9
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.2e-61 238.4 160 71.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.1e-60 237.7 152 75.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.4e-60 236.5 152 74.3
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.1e-60 236.1 152 73.0
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.1e-60 236.1 160 70.6
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 4.0e-60 235.7 152 75.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.0e-60 235.7 152 75.7
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.3e-60 235.3 152 75.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 9.0e-60 234.6 158 72.2
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.2e-59 234.2 152 73.7
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.5e-59 233.8 152 75.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.5e-59 233.8 160 71.9
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.5e-59 233.8 152 73.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-59 233.8 152 73.7
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.5e-59 233.8 160 71.9
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.6e-59 233.0 160 71.2
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.4e-59 232.6 152 73.7
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 4.5e-59 232.3 149 74.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 5.8e-59 231.9 152 73.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.8e-59 231.9 152 75.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.6e-59 231.5 152 73.7
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 7.6e-59 231.5 152 73.7
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 2.9e-58 229.6 152 69.7
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 3.8e-58 229.2 158 70.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 4.9e-58 228.8 160 70.0
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.1e-57 227.6 152 71.1
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.4e-57 226.5 160 69.4
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.4e-57 226.5 150 73.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.2e-57 226.1 152 73.7
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.2e-57 225.7 152 71.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 5.4e-57 225.3 142 74.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 7.1e-57 224.9 152 71.1
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 7.1e-57 224.9 152 71.1
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 7.1e-57 224.9 166 69.3
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 7.1e-57 224.9 161 67.1
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.2e-56 224.2 152 71.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-56 223.8 144 75.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.6e-56 223.8 150 70.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.6e-56 223.8 152 69.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.6e-56 223.8 152 70.4
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.6e-56 223.8 152 71.7
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.6e-56 223.8 152 69.1
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.1e-56 223.4 152 69.1
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.7e-56 223.0 152 70.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-56 223.0 152 70.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.7e-56 223.0 152 69.7
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.5e-56 222.6 152 68.4
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.5e-56 222.6 152 69.1
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 4.6e-56 222.2 152 69.7
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 4.6e-56 222.2 152 69.7
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 4.6e-56 222.2 152 67.1
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 6.0e-56 221.9 144 73.6
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 6.0e-56 221.9 152 71.1
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.0e-55 221.1 152 68.4
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.3e-55 220.7 149 70.5
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.3e-55 220.7 150 69.3
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.3e-55 220.7 150 69.3
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.3e-55 220.7 149 69.8
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.3e-55 220.7 148 72.3
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.8e-55 220.3 147 70.7
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.8e-55 220.3 152 68.4
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.3e-55 219.9 152 69.7
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.3e-55 219.9 148 70.9
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.0e-55 219.5 144 69.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.0e-55 219.5 152 69.1
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 5.1e-55 218.8 152 68.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 8.7e-55 218.0 152 67.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 8.7e-55 218.0 153 71.2
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.1e-54 217.6 150 67.3
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-54 217.6 152 68.4
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.9e-54 216.9 150 68.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.5e-54 216.5 140 74.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.6e-54 215.3 147 70.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 7.4e-54 214.9 152 67.1
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 9.6e-54 214.5 152 66.4
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 9.6e-54 214.5 152 67.8
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.3e-53 214.2 152 65.8
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.1e-53 213.4 152 65.8
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 4.8e-53 212.2 144 69.4
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 4.8e-53 212.2 144 69.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 6.2e-53 211.8 152 65.8
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.2e-53 211.8 149 66.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 6.2e-53 211.8 147 68.7
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.1e-52 211.1 152 65.1
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.1e-52 211.1 152 65.1
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.1e-52 211.1 152 65.8
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.4e-52 209.9 152 64.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.4e-52 209.9 152 64.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.1e-52 209.5 152 65.1
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.1e-52 209.5 152 65.1
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 4.0e-52 209.1 152 64.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 4.0e-52 209.1 152 64.5
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 4.0e-52 209.1 152 65.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 4.0e-52 209.1 163 63.2
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-51 207.2 152 64.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.5e-51 207.2 152 64.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.5e-51 207.2 152 64.5
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.0e-51 206.8 153 67.3
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.0e-51 206.8 144 66.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.6e-51 206.5 145 66.9
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.6e-51 206.5 142 67.6
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 5.8e-51 205.3 152 65.1
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.6e-51 204.9 145 66.2
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.3e-50 204.1 145 65.5
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.3e-50 204.1 142 66.9
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.7e-50 203.8 151 64.2
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.7e-50 203.8 150 64.0
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 6.4e-50 201.8 141 67.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-49 201.1 147 63.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-49 201.1 138 69.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-49 201.1 138 69.6
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.4e-49 199.9 142 65.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 5.5e-49 198.7 144 66.0
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 9.3e-49 198.0 143 65.0
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.1e-48 196.8 151 71.5
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.7e-48 196.4 152 65.1
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.0e-48 195.3 144 63.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.0e-48 195.3 145 64.1
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-47 194.5 150 60.7
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.5e-46 190.7 152 60.5
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.5e-46 189.9 149 63.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.2e-42 176.8 111 74.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.2e-42 176.8 152 60.5
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.5e-41 173.3 111 74.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 3.2e-41 172.9 111 74.8
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.1e-40 170.2 140 58.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.5e-40 169.5 152 55.9
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.8e-39 167.2 110 74.5
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 6.7e-39 165.2 140 59.3
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.1e-38 164.5 124 67.7
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.9e-38 163.7 112 67.9
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 5.7e-38 162.2 112 65.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.6e-37 160.6 158 51.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 2.2e-37 160.2 111 68.5
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 6.9e-36 155.2 140 54.3
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 6.9e-36 155.2 142 55.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 8.5e-34 148.3 156 51.3
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.9e-33 147.1 138 50.0
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.3e-30 136.0 148 49.3
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 2.0e-27 127.1 143 46.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 5.9e-27 125.6 145 49.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.9e-26 123.2 86 70.9
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.5e-25 120.2 87 66.7
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.5e-19 100.9 60 80.0
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-18 98.2 64 70.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 6.5e-18 95.5 68 66.2
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 6.5e-18 95.5 62 69.4
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.5e-17 92.4 64 70.3
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.1e-16 90.5 139 36.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-16 89.7 66 63.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.8e-15 85.1 113 44.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.7e-14 82.4 66 57.6
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.3e-13 81.3 101 41.6
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.7e-13 80.9 72 56.9
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-12 77.8 104 41.3
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 7.7e-11 72.0 49 67.3
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.2e-10 70.5 45 73.3
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.4e-09 65.1 39 74.4
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.7e-08 62.8 45 66.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.7e-08 62.8 45 66.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.2e-07 59.3 48 58.3


User provided reference genes

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