Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.3e-126 456.4 236 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.5e-95 353.2 236 74.2
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.5e-95 353.2 236 72.5
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.0e-94 350.5 236 72.5
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.7e-94 349.7 236 72.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.1e-93 347.1 236 72.0
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 5.5e-93 344.7 236 72.5
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 7.1e-93 344.4 240 72.1
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 7.1e-93 344.4 236 72.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 9.3e-93 344.0 236 72.9
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.6e-92 343.2 236 70.8
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 2.7e-92 342.4 233 71.7
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.5e-92 342.0 236 71.2
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 4.6e-92 341.7 236 70.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 7.9e-92 340.9 236 69.5
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.0e-91 340.5 236 71.6
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.8e-91 339.7 236 70.3
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.3e-91 339.3 236 72.0
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.3e-91 339.3 233 72.1
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.3e-91 339.3 236 69.1
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 8.7e-91 337.4 236 69.5
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.9e-90 336.3 236 70.8
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.9e-90 336.3 236 70.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.9e-90 336.3 236 69.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.5e-90 335.9 238 70.2
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.5e-90 335.9 234 69.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 69.9
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 7.4e-90 334.3 236 67.4
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 7.4e-90 334.3 236 69.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.6e-89 333.2 236 68.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.6e-89 333.2 236 68.2
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.1e-89 332.8 236 69.5
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 8.2e-89 330.9 236 68.2
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.4e-88 330.1 233 68.7
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.8e-88 329.7 236 68.6
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 5.3e-88 328.2 236 67.8
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.9e-88 327.8 236 68.2
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 9.0e-88 327.4 260 61.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 9.0e-88 327.4 236 67.8
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.5e-87 326.6 233 67.4
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 4.5e-87 325.1 236 68.2
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 5.8e-87 324.7 236 68.6
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.8e-87 324.7 236 68.2
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.8e-87 324.7 236 66.1
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.6e-87 324.3 236 67.8
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.2e-86 322.8 238 68.5
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.8e-86 322.0 236 68.2
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 8.4e-86 320.9 236 66.1
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.9e-85 319.7 238 67.6
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.2e-85 318.5 231 68.0
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 5.5e-85 318.2 236 66.1
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 5.5e-85 318.2 237 67.1
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 5.5e-85 318.2 238 67.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 7.1e-85 317.8 236 65.3
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 9.3e-85 317.4 236 65.3
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.2e-84 317.0 236 65.3
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 4.6e-84 315.1 233 66.1
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 7.9e-84 314.3 231 64.5
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.3e-83 313.5 236 64.4
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.8e-83 313.2 282 57.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 6.7e-83 311.2 234 64.1
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 6.7e-83 311.2 272 57.7
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.7e-83 310.8 236 63.6
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.9e-82 309.7 236 64.0
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 3.3e-82 308.9 236 64.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 4.3e-82 308.5 236 64.4
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 7.4e-82 307.8 236 64.4
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.3e-81 307.0 233 64.8
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.3e-81 307.0 233 64.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 2.8e-81 305.8 303 52.8
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 3.7e-81 305.4 204 72.1
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 6.3e-81 304.7 238 65.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 8.2e-81 304.3 196 78.1
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.8e-80 303.1 236 65.7
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.8e-80 303.1 232 63.8
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 4.1e-80 302.0 210 71.4
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.3e-80 301.6 205 72.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.2e-79 300.4 236 62.3
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.0e-79 299.7 201 71.6
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 2.0e-79 299.7 206 69.9
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.6e-79 299.3 237 61.6
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.4e-79 298.9 240 62.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.5e-79 298.5 204 72.5
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.0e-78 297.4 204 70.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.7e-78 296.6 220 68.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.8e-78 295.4 239 63.6
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 8.5e-78 294.3 231 64.9
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 3.2e-77 292.4 234 59.8
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-76 289.7 218 65.1
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 6.1e-76 288.1 237 63.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 6.1e-76 288.1 237 63.3
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.4e-75 287.0 203 69.5
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 6.7e-75 284.6 199 69.8
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 6.7e-75 284.6 236 58.5
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.1e-74 283.9 187 71.7
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 4.3e-74 282.0 260 57.7
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.7e-74 280.8 230 59.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.7e-74 280.8 230 59.1
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.7e-73 280.0 230 59.1
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.7e-73 278.9 233 62.2
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 6.3e-73 278.1 230 58.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 8.2e-73 277.7 230 59.1
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-72 277.3 239 58.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 6.9e-72 274.6 221 62.9
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.2e-71 273.9 228 61.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.7e-70 270.0 227 58.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 3.8e-70 268.9 190 71.1
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.2e-68 263.8 232 56.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.6e-68 262.3 188 69.1
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.9e-68 261.2 258 55.0
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 5.7e-66 255.0 222 57.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.4e-66 254.6 208 63.0
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.7e-65 253.4 167 73.1
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.7e-65 253.4 166 72.9
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.8e-65 252.7 226 54.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.4e-64 249.6 237 53.2
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 2.2e-62 243.0 167 70.7
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.2e-60 237.3 219 55.3
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 4.0e-59 232.3 151 74.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 5.2e-59 231.9 226 53.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.5e-58 230.3 233 53.2
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 8.2e-57 224.6 237 53.6
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 6.5e-54 214.9 147 68.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.5e-54 214.5 204 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 8.0e-52 208.0 170 58.8
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.3e-46 190.7 126 73.0
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 6.1e-44 181.8 135 65.2
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.4e-43 180.6 135 63.7
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.7e-38 163.7 236 40.7
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-36 157.1 102 73.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.6e-36 156.0 104 72.1
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.5e-34 150.6 109 65.1
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.1e-32 144.4 130 56.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.8e-32 143.7 236 36.9
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 3.2e-32 142.9 111 65.8
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 9.2e-32 141.4 100 67.0
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 8.6e-30 134.8 262 35.5
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-29 134.4 143 47.6
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.1e-27 126.3 230 33.0
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.3e-25 120.9 76 68.4
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.2e-25 120.2 211 32.7
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.1e-21 107.8 228 33.3
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.1e-21 107.8 228 33.3
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 2.3e-19 100.1 76 61.8
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 9.8e-18 94.7 98 55.1
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.4e-16 90.1 65 69.2
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.3e-14 84.3 196 30.1
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.5e-13 80.9 51 82.4
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.6e-12 76.3 90 43.3
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.6e-10 70.1 49 63.3
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 5.8e-10 68.9 52 57.7
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 3.7e-09 66.2 56 53.6
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.9e-09 65.9 53 56.6
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.1e-08 64.7 57 49.1
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-07 60.5 47 59.6


User provided reference genes

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