Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 7.4e-209 730.3 379 100.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 4.5e-97 359.0 381 58.0
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 7.7e-97 358.2 386 57.8
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 6.5e-96 355.1 389 55.8
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.9e-95 353.6 387 57.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 2.7e-94 349.7 387 57.6
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 4.7e-94 349.0 393 56.0
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.7e-93 345.1 387 55.6
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 3.3e-92 342.8 375 58.4
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.5e-89 334.0 393 57.5
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 5.0e-88 328.9 380 54.2
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 8.5e-88 328.2 373 53.4
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 3.2e-87 326.2 398 53.0
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.5e-87 325.5 398 52.3
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-86 324.3 397 52.1
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.6e-86 322.8 402 52.2
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.3e-85 320.1 374 54.8
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 2.3e-85 320.1 372 54.0
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.9e-85 319.3 397 52.6
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 8.8e-85 318.2 391 50.9
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 8.8e-85 318.2 399 50.9
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.4e-84 315.8 398 52.3
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-83 314.3 380 53.2
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.3e-83 314.3 384 53.1
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.3e-83 314.3 408 50.2
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 3.7e-83 312.8 365 54.0
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 8.2e-83 311.6 387 51.9
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.1e-82 311.2 392 51.3
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.1e-82 311.2 392 51.3
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.4e-82 310.1 387 53.5
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 4.1e-82 309.3 399 50.9
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.3e-82 308.9 379 53.6
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 4.5e-81 305.8 388 51.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.7e-80 303.9 393 51.1
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.9e-80 303.1 384 49.7
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.5e-79 300.8 371 48.5
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 3.2e-79 299.7 368 47.6
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 4.2e-79 299.3 376 50.8
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 7.2e-79 298.5 370 47.6
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 9.4e-79 298.1 366 51.1
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.0e-77 294.7 382 49.7
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.2e-76 291.2 398 50.5
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.5e-76 290.8 393 49.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 7.5e-76 288.5 380 48.2
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.5e-76 288.5 380 47.9
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 7.5e-76 288.5 375 50.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 9.7e-76 288.1 379 48.5
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 9.7e-76 288.1 362 51.4
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.3e-75 287.7 377 50.9
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.7e-75 287.3 373 47.7
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 6.3e-75 285.4 381 47.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 8.2e-75 285.0 371 50.1
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 8.2e-75 285.0 344 52.9
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.4e-74 284.3 391 47.8
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 3.1e-74 283.1 378 50.5
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 5.3e-74 282.3 367 47.7
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 7.0e-74 282.0 379 50.7
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.6e-73 280.8 380 46.3
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.0e-73 280.4 381 47.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.7e-73 280.0 372 50.0
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.5e-73 279.6 371 50.1
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 3.5e-73 279.6 379 49.1
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 5.9e-73 278.9 386 50.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.9e-73 278.9 371 50.1
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 5.9e-73 278.9 380 46.1
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 7.7e-73 278.5 380 48.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-72 277.3 371 50.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.1e-71 274.6 366 46.7
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.6e-70 270.8 385 47.3
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 3.6e-70 269.6 377 48.0
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 5.2e-69 265.8 454 44.1
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 6.8e-69 265.4 373 45.6
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.0e-68 263.8 373 48.3
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.8e-67 260.0 380 46.1
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.7e-67 259.6 378 45.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.3e-67 258.8 394 44.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.8e-66 257.3 376 45.7
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 9.1e-66 255.0 373 44.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.7e-65 253.4 368 47.0
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 7.7e-65 251.9 399 42.9
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 3.8e-64 249.6 379 44.1
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.5e-63 247.7 442 42.5
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.9e-63 247.3 378 44.2
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 2.5e-63 246.9 424 42.9
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.5e-63 246.9 365 46.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 7.2e-63 245.4 374 46.5
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 9.5e-63 245.0 377 45.4
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.8e-61 240.7 404 44.8
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.0e-61 239.6 366 43.7
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.2e-60 238.0 381 45.9
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.5e-60 237.7 385 42.6
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.4e-60 236.5 367 45.8
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 4.4e-60 236.1 390 43.8
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.3e-59 234.6 352 47.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 4.5e-57 226.1 393 41.5
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.5e-55 221.1 394 43.1
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.8e-54 216.9 238 52.5
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.6e-54 216.5 196 60.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.8e-53 214.2 364 44.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.7e-51 207.6 359 39.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.2e-51 207.2 297 46.5
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 7.8e-49 198.7 367 42.2
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.7e-48 197.6 367 39.8
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 9.5e-47 191.8 354 41.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 4.7e-46 189.5 370 38.4
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.0e-45 186.4 275 45.8
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.4e-44 183.3 209 51.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.4e-44 183.3 260 45.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 5.8e-44 182.6 393 37.4
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 4.9e-43 179.5 344 39.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.9e-42 177.6 207 47.3
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.1e-42 176.4 198 51.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 5.4e-42 176.0 393 36.9
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 6.6e-40 169.1 289 41.9
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 5.6e-39 166.0 351 38.7
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.6e-38 164.5 377 38.7
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.1e-38 164.1 374 37.4
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 8.1e-38 162.2 366 37.4
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 9.9e-36 155.2 224 44.2
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 3.2e-34 150.2 126 56.3
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 9.2e-34 148.7 364 33.8
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 3.9e-32 143.3 365 33.4
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-31 141.7 251 43.4
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.5e-31 141.4 369 34.4
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 6.4e-27 125.9 190 42.1
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.2e-26 123.6 112 63.4
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 7.8e-25 119.0 364 34.3
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 6.9e-21 105.9 120 60.0
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.9e-19 100.5 174 36.8
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.9e-19 99.8 124 54.8
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.6e-17 94.7 148 38.5
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.6e-14 84.7 165 35.8
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.9e-13 79.3 165 32.7
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.4e-12 77.0 372 26.9
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.3e-11 75.1 159 33.3
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.3e-11 75.1 159 32.7
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.2e-11 74.3 164 32.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.6e-09 68.2 90 40.0
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.8e-08 64.7 87 48.3
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 1.5e-07 61.6 236 27.5
Lj5C98T5 Lonicera japonica HOM05D001735 ORTHO05D001640 3.3e-07 60.5 166 30.1
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 3.3e-07 60.5 160 31.2
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 4.3e-07 60.1 160 31.2
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 4.3e-07 60.1 160 31.2
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 4.3e-07 60.1 160 31.2
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 4.3e-07 60.1 160 31.2
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 5.6e-07 59.7 160 30.6
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 9.6e-07 58.9 160 30.6
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 9.6e-07 58.9 160 30.6
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 359 25.6
Sopen03g030250 Solanum pennellii HOM05D001735 ORTHO05D001640 1.6e-06 58.2 227 29.5
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 227 29.1
CSS0016125 Camellia sinensis var. sinensis HOM05D001735 ORTHO05D001640 6.2e-06 56.2 239 28.0
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 8.1e-06 55.8 228 29.8


User provided reference genes

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