Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.4e-262 908.3 457 100.0
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 3.2e-206 721.8 455 81.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.3e-201 704.5 454 78.4
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 2.6e-200 702.2 445 79.3
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.7e-199 699.5 392 86.0
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.9e-198 696.0 452 78.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 2.4e-198 695.7 459 76.3
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 7.1e-198 694.1 458 78.4
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.2e-197 693.3 448 78.8
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.7e-197 692.2 459 76.3
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 3.5e-197 691.8 460 77.6
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 6.0e-197 691.0 430 80.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 6.0e-197 691.0 452 77.9
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 6.0e-197 691.0 411 83.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.3e-196 689.1 456 77.6
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.1e-196 688.0 451 76.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 5.1e-196 688.0 459 75.6
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 6.7e-196 687.6 457 77.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 8.7e-196 687.2 402 84.3
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.1e-195 686.8 454 78.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 5.6e-195 684.5 393 85.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 5.6e-195 684.5 452 77.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.6e-195 683.7 451 76.5
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 9.6e-195 683.7 445 78.4
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 9.6e-195 683.7 391 86.2
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.3e-194 683.3 456 76.5
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.6e-194 682.9 457 75.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.6e-194 682.9 452 76.5
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.6e-194 682.9 449 77.5
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.1e-194 682.6 456 76.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.8e-194 682.2 451 76.5
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 6.2e-194 681.0 455 77.6
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 8.1e-194 680.6 454 77.5
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-193 680.2 453 76.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.4e-193 679.9 385 86.2
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.8e-193 679.5 416 82.0
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 5.3e-193 677.9 394 84.3
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 5.3e-193 677.9 397 85.4
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 6.9e-193 677.6 405 83.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 9.0e-193 677.2 454 75.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 9.0e-193 677.2 410 81.5
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.2e-192 676.8 468 75.4
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.5e-192 676.4 402 83.6
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.5e-192 676.4 449 76.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-192 676.4 459 74.7
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-192 676.4 452 75.4
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.6e-192 675.6 452 76.1
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.6e-192 675.6 452 75.2
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.4e-192 675.2 452 75.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 7.6e-192 674.1 455 76.5
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 9.9e-192 673.7 402 83.6
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.7e-191 672.9 386 85.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.2e-191 672.5 381 86.1
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.2e-191 672.5 452 75.9
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 3.8e-191 671.8 385 85.5
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 3.8e-191 671.8 469 75.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 4.9e-191 671.4 391 83.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 6.4e-191 671.0 402 83.6
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 8.4e-191 670.6 389 83.8
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.4e-191 670.6 452 75.4
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 8.4e-191 670.6 374 86.9
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.4e-190 669.8 455 76.0
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.4e-190 669.8 431 78.4
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.4e-190 669.8 389 84.1
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.4e-190 669.8 384 85.2
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.4e-190 669.8 386 86.0
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 2.4e-190 669.1 393 83.5
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.4e-190 669.1 372 86.0
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.2e-190 668.7 459 74.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.2e-190 668.3 381 86.1
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 5.5e-190 667.9 420 79.0
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 9.3e-190 667.2 403 81.6
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 9.3e-190 667.2 385 85.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.6e-189 666.4 464 72.6
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.6e-189 666.4 390 83.1
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.7e-189 665.6 383 85.1
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 4.6e-189 664.8 461 74.6
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 6.0e-189 664.5 388 83.8
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.3e-188 663.3 375 86.1
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.3e-188 662.5 459 75.8
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.0e-188 662.1 384 84.1
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.0e-188 662.1 460 73.9
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.9e-188 661.8 454 75.3
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 6.7e-188 661.0 388 83.8
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 6.7e-188 661.0 459 74.5
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.1e-187 660.2 421 77.4
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.9e-187 659.4 379 83.9
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 5.6e-187 657.9 382 84.0
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 7.4e-187 657.5 421 77.4
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.6e-186 656.4 392 80.6
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.1e-186 656.0 392 80.9
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 6.2e-186 654.4 410 77.8
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.1e-185 653.7 388 82.7
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-185 653.7 392 80.1
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.8e-185 652.9 524 65.3
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 3.1e-185 652.1 415 79.3
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 5.3e-185 651.4 428 75.9
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 9.0e-185 650.6 389 81.7
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.3e-183 646.7 390 80.5
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 7.9e-181 637.5 455 71.4
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 4.3e-179 631.7 405 78.8
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.1e-174 617.1 385 77.9
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.5e-174 615.9 474 69.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 4.3e-171 605.1 417 70.7
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.7e-167 593.2 373 74.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 5.7e-163 578.2 464 66.4
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 8.8e-156 554.3 356 73.9
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.8e-151 538.9 465 62.6
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-150 537.0 461 63.6
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.6e-149 533.5 323 81.4
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.0e-148 529.3 478 58.4
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.8e-145 520.0 430 62.8
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 5.3e-145 518.5 452 62.4
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.5e-142 510.4 368 68.2
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-140 503.8 347 75.5
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.5e-136 489.2 274 87.6
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.3e-135 487.3 373 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.9e-134 483.4 345 67.2
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 3.4e-131 472.6 361 63.7
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 3.5e-128 462.6 370 63.2
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.3e-127 459.9 276 80.8
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.3e-124 449.9 277 80.1
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.2e-122 443.4 289 73.4
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.1e-117 426.8 370 63.0
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.7e-117 425.6 396 59.1
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.5e-115 420.6 288 74.0
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.7e-114 417.2 252 81.7
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 6.0e-112 408.7 330 67.0
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.5e-102 377.5 290 70.0
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 4.4e-99 365.9 317 63.1
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.6e-96 357.5 210 84.8
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.7e-95 354.0 355 52.4
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 3.3e-94 349.7 331 53.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.6e-93 347.4 218 80.7
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 3.9e-87 326.2 195 77.4
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 5.1e-87 325.9 229 73.8
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 5.6e-78 295.8 211 70.6
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.6e-75 285.4 174 81.6
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 5.8e-67 259.2 177 71.2
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.0e-63 248.4 177 69.5
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-61 241.5 124 88.7
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.3e-58 231.5 412 37.6
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 5.0e-58 229.6 135 85.2
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.1e-56 224.2 291 43.6
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.1e-49 201.8 134 75.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.2e-40 171.8 115 78.3
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.8e-36 157.9 111 75.7
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.1e-36 157.1 85 85.9
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.6e-35 154.8 123 66.7
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.0e-35 154.5 120 65.0
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 4.1e-28 130.2 77 84.4
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 6.8e-23 112.8 84 69.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.2e-22 112.1 231 34.6
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 9.8e-22 109.0 117 55.6
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-17 95.1 59 84.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 7.2e-17 92.8 59 84.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-15 89.0 75 61.3
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.2e-14 85.5 50 78.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.8e-13 80.9 58 58.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 6.6e-10 69.7 44 72.7
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.0e-07 62.4 220 26.4
QL09p046950 Quercus lobata HOM05D004538 ORTHO05D337738 8.9e-07 59.3 31 87.1


User provided reference genes

Program Settings