Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 3702.1 1869 100.0
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2909.4 1813 79.3
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2840.1 1817 77.5
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2838.1 1821 77.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2780.0 1817 75.7
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2779.2 1819 75.8
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2773.4 1817 75.6
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2770.7 1816 75.9
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2767.3 1817 75.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2759.6 1817 75.2
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2758.4 1814 75.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2757.2 1818 75.6
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2752.6 1823 75.2
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2749.5 1817 74.8
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2749.2 1820 75.1
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2743.8 1820 74.9
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2741.8 1820 74.8
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2741.5 1820 74.8
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2737.6 1818 74.9
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2736.8 1834 74.3
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2733.7 1820 74.7
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2732.2 1819 74.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2726.8 1817 74.1
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2716.8 1805 75.3
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2716.8 1830 73.7
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2716.0 1766 76.1
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2700.6 1973 69.4
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2694.5 1805 75.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2660.2 1922 70.2
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2659.0 1821 72.6
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2658.6 1820 73.0
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2656.3 1856 72.7
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2654.8 1805 74.4
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2646.7 1821 72.8
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2645.5 1820 72.3
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2640.5 1819 72.2
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2637.1 1817 72.5
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2635.1 1757 74.4
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2630.1 1818 73.0
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2627.0 1813 71.6
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2625.1 1820 72.1
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2624.0 1819 71.4
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2616.6 1823 71.6
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2611.6 1817 71.1
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2608.6 1819 71.5
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2603.5 1823 71.4
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2603.5 1815 71.3
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2598.9 1897 69.0
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2591.6 1818 70.6
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2587.0 1817 71.0
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2586.6 1815 70.7
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2585.8 1818 70.9
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2584.7 1817 70.9
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2582.7 1817 70.7
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2578.1 1819 71.2
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2577.7 1820 71.0
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2570.4 1815 70.4
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2569.3 1819 70.8
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2565.4 1817 70.5
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2565.0 1819 70.5
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2564.6 1816 70.5
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2561.9 1816 70.5
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2557.7 1818 70.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2556.6 1819 70.4
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2556.6 1817 69.7
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2555.4 1815 69.6
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2554.2 1818 70.2
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2551.2 1761 72.7
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2544.6 1819 70.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2543.8 1818 69.9
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2537.7 1814 69.6
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2536.1 1816 69.6
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2535.4 1820 70.1
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2531.1 1676 76.1
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2525.7 1812 69.2
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2521.9 1809 70.1
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2519.2 1818 68.7
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2515.7 1831 68.3
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2498.0 1803 69.7
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2488.0 1847 68.0
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2483.4 1895 66.7
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2479.9 1944 65.6
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2457.9 1790 68.7
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2427.9 1835 67.6
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2426.4 1815 67.7
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2425.2 1856 66.9
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2421.0 1825 67.0
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2407.5 1903 65.5
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2388.6 1625 73.2
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2370.5 1837 64.7
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2365.1 1814 66.6
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2333.5 1560 75.3
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2300.0 1822 63.2
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2298.1 1828 63.3
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2263.4 1652 69.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2226.1 1677 66.8
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2175.2 1517 71.1
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2155.2 1739 65.1
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2135.5 1442 72.8
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2135.5 1814 59.8
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1832.8 1252 73.4
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1785.4 1442 63.0
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1778.1 1146 75.0
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1703.7 1816 51.4
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1434.1 1854 42.8
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1422.1 1927 41.8
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1411.7 944 71.9
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1408.7 1863 43.2
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1349.0 1871 40.6
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1255.0 1834 39.9
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1213.0 1863 38.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1180.2 1837 38.0
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1159.8 864 69.4
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 2.8e-309 1066.2 1839 35.1
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.0e-298 1031.2 944 58.7
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.7e-293 1012.7 713 70.3
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 7.0e-292 1008.4 1964 33.9
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 2.7e-259 900.2 1171 47.4
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 6.2e-248 862.4 692 61.4
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 3.0e-202 710.7 505 72.5
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.5e-166 590.9 618 56.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.9e-140 505.4 457 53.8
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.0e-137 495.4 645 46.4
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 8.1e-123 446.8 1915 25.0
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 9.9e-121 439.9 316 69.0
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.7e-117 426.8 339 66.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-114 419.9 469 47.1
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.9e-103 382.5 300 62.0
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 5.4e-103 380.9 220 75.5
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 6.0e-102 377.5 273 70.0
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 9.9e-97 360.1 250 75.2
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.0e-80 307.0 359 51.3
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.1e-79 303.5 225 63.1
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 3.2e-79 302.0 341 52.5
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 5.1e-77 294.7 1688 23.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.8e-75 288.1 167 77.8
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 3.8e-40 172.2 94 91.5
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.8e-38 166.0 138 65.9
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.2e-35 156.4 212 44.3
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.4e-34 153.7 651 24.3
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 4.0e-29 135.6 106 69.8
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 3.2e-26 125.9 802 20.0
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 8.6e-24 117.9 121 57.0
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 1.1e-23 117.5 163 46.0
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 1.8e-21 110.2 75 66.7
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 4.0e-21 109.0 74 64.9
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 8.9e-21 107.8 65 81.5
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 6.4e-19 101.7 111 54.1
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.3e-19 101.3 75 66.7
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 2.5e-15 89.7 72 63.9
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 6.2e-14 85.1 170 40.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.1e-13 82.8 73 47.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 4.0e-13 82.4 68 57.4
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 4.1e-10 72.4 96 45.8
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 7.8e-09 68.2 45 68.9


User provided reference genes

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