Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.5e-153 546.2 284 100.0
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 6.5e-109 397.9 289 74.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.0e-106 390.6 261 77.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.4e-106 390.2 282 73.8
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 8.8e-106 387.5 261 75.9
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.3e-104 381.3 283 71.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.8e-103 379.8 254 74.4
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 3.1e-103 379.0 267 73.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.1e-103 378.6 253 75.1
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.4e-103 378.3 254 76.4
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.2e-102 377.1 238 76.9
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.2e-102 377.1 237 81.0
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.2e-102 377.1 284 69.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.0e-102 376.3 236 78.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.0e-102 376.3 264 74.6
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-102 375.9 237 78.9
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 3.5e-102 375.6 284 70.1
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 3.5e-102 375.6 244 78.3
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.5e-102 375.2 240 80.0
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.0e-101 374.0 285 69.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.0e-101 374.0 244 77.5
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.0e-101 374.0 280 69.3
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.7e-101 373.2 237 80.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 2.9e-101 372.5 236 76.7
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 3.8e-101 372.1 284 69.4
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 8.6e-101 370.9 238 76.5
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 8.6e-101 370.9 284 68.7
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.6e-101 370.9 246 77.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.6e-101 370.9 284 68.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.1e-100 370.5 238 76.5
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.5e-100 370.2 261 74.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-100 370.2 284 68.0
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-100 370.2 284 68.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.3e-100 369.0 256 71.9
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.3e-100 369.0 253 75.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 3.3e-100 369.0 236 75.8
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.3e-100 369.0 236 75.8
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 3.3e-100 369.0 269 72.5
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.3e-100 368.6 237 76.8
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 4.3e-100 368.6 306 65.4
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.6e-100 368.2 256 72.3
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 5.6e-100 368.2 243 76.1
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.6e-100 368.2 232 78.9
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.5e-100 367.5 259 73.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.2e-99 367.1 256 72.3
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.6e-99 366.7 256 71.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.6e-99 366.7 248 73.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.1e-99 366.3 235 76.6
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.6e-99 365.5 267 69.3
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 6.1e-99 364.8 230 77.0
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 8.0e-99 364.4 230 79.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 8.0e-99 364.4 240 76.7
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.0e-98 364.0 275 67.6
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.4e-98 363.6 250 72.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.4e-98 363.6 236 75.4
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.4e-98 363.6 228 79.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.8e-98 363.2 254 71.7
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.8e-98 363.2 228 78.1
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.3e-98 362.8 250 72.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.3e-98 362.8 229 78.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.0e-98 362.5 255 71.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.0e-98 362.1 229 78.2
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.2e-98 361.7 264 72.3
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 5.2e-98 361.7 229 76.9
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 5.2e-98 361.7 256 70.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.8e-98 361.3 229 76.4
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.2e-97 360.5 261 69.3
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.2e-97 360.5 261 69.3
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.2e-97 360.5 286 67.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.0e-97 359.8 256 70.3
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.0e-97 359.8 256 70.3
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.0e-97 359.8 256 69.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.6e-97 359.4 229 76.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 2.6e-97 359.4 257 69.3
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.4e-97 359.0 259 72.6
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 3.4e-97 359.0 252 71.4
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 4.4e-97 358.6 229 76.4
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 5.7e-97 358.2 228 77.6
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.7e-96 356.7 232 75.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 4.9e-96 355.1 272 70.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.4e-96 354.8 260 71.2
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 8.3e-96 354.4 222 79.7
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.3e-96 354.4 262 69.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.4e-95 353.6 256 68.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-95 353.6 256 68.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.4e-95 353.6 256 68.8
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.4e-95 352.8 221 77.4
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 7.0e-95 351.3 235 74.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 7.0e-95 351.3 228 76.8
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.6e-94 350.1 264 68.6
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.6e-94 348.6 257 68.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 5.9e-94 348.2 257 68.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 7.8e-94 347.8 281 66.9
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.7e-93 346.7 258 70.2
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 6.6e-93 344.7 268 67.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.9e-92 343.2 251 69.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 7.3e-92 341.3 235 71.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.1e-91 339.7 235 71.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.1e-91 339.7 232 72.8
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 6.2e-91 338.2 245 68.2
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.1e-90 335.9 284 64.4
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.1e-90 335.9 243 70.8
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.8e-90 334.7 232 71.6
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.8e-90 334.7 254 68.5
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.2e-89 334.0 230 73.5
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.2e-89 334.0 266 64.3
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 3.2e-87 325.9 231 69.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 3.9e-85 318.9 199 77.4
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-84 317.4 276 63.4
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.3e-84 315.8 248 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.2e-83 313.9 230 69.1
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 3.6e-83 312.4 204 76.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 8.1e-83 311.2 199 75.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.2e-81 307.4 264 62.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.9e-80 302.8 201 73.6
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.4e-79 298.5 191 77.5
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 9.2e-79 297.7 199 76.4
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-78 297.4 238 64.7
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.0e-78 295.0 199 73.4
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.1e-76 290.8 226 67.3
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.9e-76 290.0 255 60.0
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-75 287.3 199 72.9
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-75 287.3 235 66.4
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.2e-73 280.8 200 69.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 4.4e-73 278.9 239 60.7
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-71 273.5 191 72.8
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.1e-71 272.3 256 55.9
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 9.2e-71 271.2 178 74.7
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.5e-70 269.2 167 80.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.7e-69 266.9 230 61.3
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.5e-68 263.1 234 58.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.2e-66 255.4 185 71.9
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 3.2e-63 246.1 227 58.1
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.8e-59 233.0 238 51.3
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.4e-58 230.7 153 77.1
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.9e-56 223.0 284 47.9
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 4.6e-54 215.7 146 71.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.1e-51 206.8 132 74.2
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 4.5e-49 199.1 146 68.5
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 3.8e-48 196.1 176 59.7
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-45 187.6 131 71.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-44 183.7 147 66.0
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.6e-41 173.3 158 62.7
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.5e-40 168.7 131 66.4
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-36 157.5 138 60.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-36 157.5 138 60.9
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.1e-34 149.4 115 68.7
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.4e-31 141.0 124 58.9
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-30 137.1 157 51.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.1e-26 124.8 74 83.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.1e-26 122.9 74 82.4
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.3e-26 122.5 74 82.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 6.9e-26 122.1 74 82.4
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.6e-25 120.2 74 79.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 8.5e-24 115.2 70 80.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.2e-22 111.3 192 35.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.4e-18 97.1 90 54.4
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.4e-18 97.1 64 73.4
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.2e-17 94.7 64 76.6
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 6.5e-16 89.0 63 71.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-15 88.2 66 68.2
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 2.6e-12 77.0 64 64.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 7.4e-12 75.5 49 79.6
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.2e-11 73.9 44 81.8
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.2e-11 73.9 64 60.9
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.8e-10 70.9 65 58.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 3.1e-10 70.1 44 75.0
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 5.5e-07 59.3 51 64.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.6e-06 57.8 207 25.6


User provided reference genes

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