Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 0.0e+00 2770.0 1414 100.0
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 9.8e-230 801.6 1485 40.6
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 2.3e-226 790.4 1486 40.0
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.2e-222 778.1 1510 39.7
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 3.0e-218 763.5 1529 39.5
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.9e-217 760.8 1494 40.3
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 4.4e-214 749.6 1479 40.2
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 4.4e-214 749.6 1512 38.8
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 9.2e-212 741.9 1524 38.7
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 2.3e-210 737.3 1492 38.5
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 4.7e-208 729.6 1470 38.9
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.8e-207 727.6 1494 39.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.0e-206 724.2 1517 38.8
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.9e-205 719.5 1493 38.2
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.6e-203 714.5 1496 38.8
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.8e-203 712.2 1488 37.8
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.8e-203 712.2 1494 37.5
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.8e-200 703.7 1494 37.1
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 1.5e-198 698.0 1516 38.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.1e-196 691.8 1226 41.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.1e-192 677.6 1451 38.6
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 6.2e-192 676.0 1490 38.2
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 5.4e-188 662.9 1510 36.3
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 4.9e-181 639.8 1494 36.9
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.5e-177 628.2 1496 36.4
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 5.3e-175 619.8 1473 37.2
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.9e-173 614.0 1484 35.9
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 7.9e-171 605.9 1487 36.2
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 9.0e-167 592.4 1520 36.4
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.5e-166 591.7 1482 35.1
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.4e-166 590.5 1412 36.6
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 3.7e-160 570.5 1215 37.0
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 4.1e-159 567.0 1516 35.5
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.6e-158 564.3 1511 35.1
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.4e-156 558.5 1514 35.0
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.4e-153 546.2 1506 34.7
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.6e-152 545.0 1504 35.2
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.0e-149 535.8 1225 36.7
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 7.2e-140 503.1 1483 33.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.7e-139 500.4 1524 32.6
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.3e-136 490.0 1288 37.0
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.9e-134 483.4 1457 33.4
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 5.9e-134 483.4 1227 35.5
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 7.7e-134 483.0 1458 33.4
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.3e-133 482.3 1232 35.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.7e-133 481.9 1476 32.6
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 9.4e-132 476.1 1464 32.6
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.6e-131 474.2 1529 32.8
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.0e-130 472.6 1206 34.7
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.4e-130 472.2 1471 32.4
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 6.7e-130 469.9 1464 32.7
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.7e-129 466.8 1220 34.4
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 2.9e-125 454.5 1329 33.0
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.7e-120 438.7 1488 31.9
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.7e-120 437.6 1449 32.2
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.1e-119 436.0 949 38.0
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.9e-116 425.2 1252 33.1
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 4.2e-116 424.1 1364 32.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 7.2e-116 423.3 1417 31.5
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 4.1e-111 407.5 1576 30.8
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.9e-108 398.7 1537 29.7
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.9e-108 398.7 1401 32.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.5e-108 398.3 1536 29.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.4e-106 392.5 1397 32.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.7e-104 385.6 1430 31.0
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.1e-103 382.9 1191 33.2
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.8e-103 382.1 1514 31.5
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 2.0e-102 378.6 1494 31.2
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 5.0e-101 374.0 1373 30.4
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.1e-100 372.9 1127 34.4
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 6.8e-98 363.6 1444 30.1
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.5e-97 362.5 1424 30.6
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 2.2e-96 358.6 1210 32.1
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 2.3e-85 322.0 702 38.2
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.3e-84 318.2 1290 30.6
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 7.3e-84 317.0 1156 31.4
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.4e-82 312.8 1182 31.0
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.5e-81 309.3 1237 31.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.4e-79 302.8 1255 30.4
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 3.0e-77 295.0 1400 28.9
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.7e-77 293.5 1174 30.2
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 9.6e-76 290.0 1492 27.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.4e-74 286.2 1002 30.4
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.2e-74 284.3 1385 28.4
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.9e-71 275.8 1189 28.6
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 3.5e-70 271.6 761 35.1
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 2.3e-69 268.9 1216 28.0
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.8e-67 261.9 727 34.9
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 4.9e-64 251.1 495 40.0
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 4.2e-63 248.1 390 44.1
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.9e-61 241.5 441 39.7
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.2e-57 229.9 1194 27.6
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.5e-57 229.6 510 35.5
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.6e-57 228.8 614 33.9
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.9e-55 222.6 504 34.7
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 9.3e-55 220.3 1196 27.0
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.2e-54 219.9 1384 26.2
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.6e-54 218.0 513 34.5
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.3e-53 216.5 1206 27.6
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 5.1e-53 214.5 507 34.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.6e-52 211.1 1196 27.3
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 1.6e-51 209.5 559 34.2
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.1e-51 209.1 1197 27.7
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.1e-50 206.8 1128 27.7
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.1e-50 206.8 1346 26.4
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.4e-50 205.7 458 35.8
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.2e-49 203.4 711 30.8
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.2e-47 195.3 1191 27.2
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.7e-46 192.2 1191 27.7
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 3.5e-46 191.8 503 33.8
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.6e-46 191.4 502 33.3
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.9e-44 186.0 948 28.8
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.9e-44 186.0 434 35.5
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.3e-44 184.9 1152 26.3
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-43 183.0 1219 27.0
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 4.8e-43 181.4 1214 26.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-42 179.9 1215 25.9
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 4.1e-42 178.3 1190 25.6
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.3e-42 177.9 953 27.0
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 6.9e-42 177.6 942 27.8
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 6.9e-42 177.6 1189 26.1
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 6.9e-42 177.6 473 34.9
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 9.0e-42 177.2 941 27.8
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-41 176.8 495 31.9
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-41 175.6 1223 25.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.6e-41 175.6 1223 25.8
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.2e-38 166.8 1202 26.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.6e-38 166.4 1183 25.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 5.1e-37 161.4 1255 24.1
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-36 160.2 452 32.7
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.9e-36 159.5 468 32.7
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.5e-36 159.1 980 26.8
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 3.3e-36 158.7 478 32.2
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-36 158.7 442 32.8
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 5.7e-36 157.9 1223 25.4
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 7.4e-36 157.5 496 30.6
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-35 156.8 434 31.3
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-35 156.8 411 33.6
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 2.8e-35 155.6 411 33.8
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-34 152.9 1074 25.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 3.1e-34 152.1 297 38.0
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 3.1e-34 152.1 987 24.6
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 9.1e-34 150.6 1222 24.9
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.2e-33 150.2 444 33.1
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-33 149.8 424 32.3
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.5e-33 149.8 444 32.9
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-33 149.1 436 32.1
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.5e-33 148.3 455 31.4
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 4.5e-33 148.3 455 31.4
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.9e-33 147.9 456 32.5
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 7.7e-33 147.5 1087 25.1
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 8.5e-32 144.1 1223 24.7
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 2.5e-31 142.5 480 32.3
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 4.2e-31 141.7 483 32.3
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-31 141.4 483 32.3
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 3.9e-29 135.2 1241 24.2
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 4.1e-26 125.2 212 41.5
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 4.1e-26 125.2 212 41.5
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.5e-25 121.7 276 37.0
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 2.9e-24 119.0 1224 24.1
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.2e-23 114.4 539 26.9
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 9.7e-20 104.0 217 39.2
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.5e-15 89.4 136 36.8
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 3.2e-15 89.0 263 30.8
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 4.2e-15 88.6 668 23.4
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.4e-10 73.6 243 28.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 4.1e-10 72.0 280 26.8
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 4.1e-10 72.0 374 27.3
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.3e-10 71.6 106 45.3
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.2e-08 66.2 250 28.0
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 3.8e-08 65.5 253 27.3
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 5.0e-08 65.1 84 40.5
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 6.5e-08 64.7 58 51.7
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 7.2e-07 61.2 50 56.0
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 1.6e-06 60.1 42 61.9
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 1.6e-06 60.1 42 57.1
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 1.6e-06 60.1 57 50.9
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 2.1e-06 59.7 77 36.4
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 8.0e-06 57.8 461 22.8


User provided reference genes

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