Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.5e-175 617.5 295 100.0
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.4e-138 496.5 289 82.7
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 5.4e-106 388.3 309 62.8
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 3.5e-105 385.6 287 64.5
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.6e-105 385.2 293 63.1
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.6e-104 381.3 297 64.6
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.5e-103 380.2 298 63.8
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-103 379.8 308 61.4
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.5e-103 379.4 312 62.5
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.3e-103 379.0 309 61.8
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.3e-103 379.0 297 62.6
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.3e-103 379.0 313 60.7
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 3.3e-103 379.0 312 61.9
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 4.3e-103 378.6 293 62.5
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.6e-103 378.3 304 62.5
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.2e-102 377.1 313 60.7
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.2e-102 377.1 293 62.8
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.6e-102 376.7 310 60.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.6e-102 376.7 313 60.1
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 6.2e-102 374.8 310 61.0
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 6.2e-102 374.8 309 58.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 8.0e-102 374.4 307 60.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.4e-101 373.6 314 59.9
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.8e-101 373.2 307 60.6
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.8e-101 373.2 307 60.6
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.8e-101 373.2 300 61.7
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.8e-101 373.2 312 59.3
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.8e-101 373.2 308 58.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.8e-101 373.2 299 61.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.1e-101 372.5 310 59.4
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 3.1e-101 372.5 311 60.8
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 6.8e-101 371.3 311 59.2
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.8e-101 371.3 307 60.9
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 6.8e-101 371.3 308 58.8
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 8.9e-101 370.9 310 59.0
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.5e-100 370.2 313 58.8
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.6e-100 369.4 301 59.8
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 3.4e-100 369.0 309 58.9
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.4e-100 369.0 311 58.8
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 4.4e-100 368.6 311 58.8
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 4.4e-100 368.6 305 59.0
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 9.8e-100 367.5 307 59.9
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.3e-99 367.1 310 58.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.7e-99 366.7 307 60.6
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.7e-99 366.7 311 58.8
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.7e-99 366.7 307 59.6
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.7e-99 366.7 312 59.3
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.2e-99 366.3 302 61.3
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 2.9e-99 365.9 289 61.9
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 3.7e-99 365.5 309 58.3
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.9e-99 365.2 309 57.3
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 6.4e-99 364.8 297 60.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.1e-98 364.0 292 59.9
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.1e-98 364.0 310 59.0
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.4e-98 363.6 294 61.6
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.2e-98 362.5 300 60.7
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.1e-98 362.1 310 60.3
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 4.1e-98 362.1 305 58.7
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.4e-98 361.7 308 57.8
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 5.4e-98 361.7 308 57.5
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 7.0e-98 361.3 292 59.2
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 7.0e-98 361.3 292 59.6
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 7.0e-98 361.3 305 58.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 9.2e-98 360.9 301 60.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 9.2e-98 360.9 295 59.7
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 3.5e-97 359.0 314 56.4
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 7.8e-97 357.8 288 58.7
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 7.8e-97 357.8 301 58.8
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.3e-96 357.1 313 58.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.0e-96 355.9 289 60.2
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 6.6e-96 354.8 308 57.1
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 8.6e-96 354.4 293 58.0
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.1e-95 354.0 293 60.4
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.1e-95 354.0 305 58.0
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.9e-95 353.2 299 59.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.9e-95 353.2 293 57.7
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.5e-95 352.8 288 60.1
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 9.5e-95 350.9 290 59.0
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 2.1e-94 349.7 292 58.9
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.4e-93 347.1 294 59.5
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.3e-93 346.3 291 57.4
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.1e-93 345.9 292 57.5
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.0e-93 345.5 291 57.7
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 5.2e-93 345.1 353 51.8
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.0e-92 343.2 306 55.9
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 3.4e-92 342.4 305 55.4
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.7e-91 339.0 294 57.1
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.7e-91 339.0 299 55.2
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.3e-91 337.8 290 56.9
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-90 337.0 285 60.0
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.2e-90 335.9 292 55.8
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.2e-90 335.9 285 60.0
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.4e-90 335.1 285 60.4
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 9.2e-90 334.3 292 54.8
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.6e-89 333.6 291 56.0
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.6e-89 333.6 299 54.8
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-89 332.8 285 60.0
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.7e-89 332.8 272 58.1
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 6.0e-89 331.6 285 60.0
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-89 331.3 285 59.6
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-89 331.3 285 59.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.0e-88 330.9 285 59.3
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.7e-88 330.1 290 56.2
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.7e-88 330.1 290 56.2
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-88 330.1 284 59.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-88 330.1 284 59.9
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 2.5e-87 326.2 270 58.5
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 4.3e-87 325.5 291 56.0
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 4.3e-87 325.5 291 56.0
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 5.6e-87 325.1 292 55.8
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.5e-87 324.3 225 65.8
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 2.8e-86 322.8 311 53.7
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.7e-86 322.0 213 67.6
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 6.2e-86 321.6 291 53.6
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.1e-86 321.2 284 59.2
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.3e-83 313.9 258 60.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 2.1e-81 306.6 334 48.5
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.3e-80 303.9 310 51.0
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.1e-79 300.8 300 49.7
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.9e-79 300.1 294 51.7
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 2.8e-78 296.2 298 50.0
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.1e-73 280.0 315 49.8
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-72 277.7 207 64.3
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.0e-72 277.7 312 46.2
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 5.1e-72 275.4 198 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 8.7e-72 274.6 288 49.0
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 2.8e-70 269.6 182 65.9
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 8.1e-70 268.1 308 49.0
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.4e-69 266.5 243 55.1
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.0e-69 265.8 213 56.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.3e-67 260.8 313 46.3
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.8e-54 216.5 144 67.4
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 9.0e-53 211.5 149 61.1
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.3e-48 197.6 170 51.8
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 3.9e-48 196.1 324 38.3
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 3.1e-37 159.8 202 46.0
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 3.8e-35 152.9 161 54.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 6.1e-33 145.6 213 38.5
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 5.7e-31 139.0 142 55.6
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.5e-23 114.4 246 33.7
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.4e-23 112.1 78 56.4
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 5.0e-19 99.4 262 31.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.1e-18 98.2 282 25.5
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.1e-18 98.2 231 29.4
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.1e-17 94.0 66 69.7
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.7e-17 92.8 72 56.9
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.5e-15 87.8 51 66.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.6e-12 77.8 54 64.8
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.1e-10 71.6 257 27.6
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 5.2e-08 62.8 53 62.3
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.8e-08 62.4 51 64.7
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-07 61.6 48 52.1
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 5.7e-07 59.3 208 26.9
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 5.7e-07 59.3 53 52.8
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.8e-06 57.0 158 27.8


User provided reference genes

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