Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.2e-157 558.9 276 100.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-83 313.9 219 74.0
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.6e-83 313.5 219 72.1
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-80 303.9 219 71.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 2.0e-78 296.6 220 70.5
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 2.9e-77 292.7 222 69.8
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.9e-77 292.7 216 69.4
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 2.9e-77 292.7 210 70.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 3.8e-77 292.4 220 70.0
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.4e-76 290.4 223 69.5
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.4e-76 290.4 199 72.9
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 7.1e-76 288.1 203 69.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 9.3e-76 287.7 218 65.6
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.2e-75 287.3 224 66.5
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.3e-74 283.9 228 67.5
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 5.1e-74 282.0 228 63.6
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 6.6e-74 281.6 218 67.0
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 8.7e-74 281.2 220 67.3
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.3e-73 279.3 221 66.5
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 4.3e-73 278.9 219 66.7
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 4.3e-73 278.9 199 69.8
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.6e-72 276.9 205 69.3
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.8e-72 276.2 222 66.7
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 3.6e-72 275.8 220 65.5
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 3.6e-72 275.8 226 65.9
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 3.6e-72 275.8 176 75.0
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 3.6e-72 275.8 222 67.1
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 6.2e-72 275.0 226 64.6
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 6.2e-72 275.0 176 75.0
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 8.1e-72 274.6 175 74.3
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 8.1e-72 274.6 222 67.6
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 8.1e-72 274.6 209 67.0
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 8.1e-72 274.6 226 65.0
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 3.1e-71 272.7 223 65.5
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 4.0e-71 272.3 185 70.8
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 4.0e-71 272.3 221 65.6
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 5.3e-71 271.9 221 66.1
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 6.9e-71 271.6 216 65.3
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.9e-71 271.6 216 65.3
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.2e-70 270.8 221 64.3
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.5e-70 270.4 220 65.5
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-70 270.4 218 65.1
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.5e-70 270.4 223 64.1
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.0e-70 270.0 222 65.3
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 2.6e-70 269.6 208 66.3
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.6e-70 269.6 202 68.8
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.6e-70 269.6 221 65.2
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 3.4e-70 269.2 208 66.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 5.8e-70 268.5 172 75.0
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 5.8e-70 268.5 218 63.3
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 7.6e-70 268.1 210 65.7
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 9.9e-70 267.7 179 73.7
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.7e-69 266.9 204 67.2
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 3.8e-69 265.8 214 63.1
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 4.9e-69 265.4 179 74.9
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 4.9e-69 265.4 179 73.2
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 6.4e-69 265.0 187 69.0
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 6.4e-69 265.0 203 66.5
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 6.4e-69 265.0 203 66.5
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 8.4e-69 264.6 204 66.7
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 8.4e-69 264.6 209 64.6
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.1e-68 264.2 175 73.1
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.1e-68 264.2 262 55.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.4e-68 263.8 175 72.6
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.4e-68 263.8 219 62.1
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.9e-68 263.5 179 72.6
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.9e-68 263.5 179 72.6
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.2e-68 262.7 179 72.6
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 4.2e-68 262.3 220 63.6
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 4.2e-68 262.3 219 61.6
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 4.2e-68 262.3 179 72.1
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 5.4e-68 261.9 249 57.4
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 5.4e-68 261.9 174 70.1
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 4.6e-67 258.8 206 65.0
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 7.9e-67 258.1 212 60.4
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 7.9e-67 258.1 198 64.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 6.7e-66 255.0 171 70.2
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.7e-66 254.6 170 68.8
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.1e-65 254.2 238 57.1
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.5e-65 253.8 194 70.1
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.5e-65 253.1 200 65.0
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 3.3e-65 252.7 185 63.8
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.1e-63 247.7 214 59.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.1e-63 247.7 171 66.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 4.0e-63 245.7 211 62.1
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.3e-63 245.4 204 60.8
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.4e-62 242.7 204 63.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.3e-61 240.7 185 64.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.8e-61 239.2 172 64.5
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 6.4e-61 238.4 169 64.5
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 8.4e-61 238.0 190 65.3
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 5.5e-60 235.3 190 62.6
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 5.5e-60 235.3 169 63.3
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 9.3e-60 234.6 193 59.1
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 3.5e-59 232.6 153 73.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 8.7e-58 228.0 158 72.2
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 9.6e-57 224.6 203 58.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 9.6e-57 224.6 148 72.3
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.1e-56 223.4 182 64.3
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.1e-56 223.4 156 68.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.8e-56 223.0 155 70.3
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 9.0e-55 218.0 180 63.3
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.0e-53 214.5 195 58.5
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.2e-53 213.4 169 64.5
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.9e-52 210.3 169 58.6
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 2.3e-50 203.4 149 66.4
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.6e-46 189.9 217 50.2
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 4.5e-46 189.1 219 50.7
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 3.8e-45 186.0 141 68.1
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 6.5e-45 185.3 146 63.7
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.0e-42 176.4 128 66.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.2e-37 160.2 177 53.1
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.5e-37 158.7 185 43.2
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 8.5e-37 158.3 130 61.5
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.9e-36 157.1 118 65.3
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.5e-36 156.8 182 42.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.9e-35 151.8 176 43.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 3.0e-34 149.8 145 53.8
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 2.6e-33 146.7 183 43.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 6.3e-32 142.1 208 40.4
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 6.3e-32 142.1 209 38.3
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.0e-29 134.8 72 86.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.3e-29 134.4 224 35.7
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.5e-28 129.0 71 83.1
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.6e-27 127.5 230 38.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.8e-26 124.0 114 55.3
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 7.4e-25 118.6 59 88.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 3.7e-24 116.3 177 38.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 8.5e-21 105.1 53 88.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.5e-20 102.4 147 38.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 6.7e-18 95.5 218 33.0
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.8e-16 90.1 122 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 4.8e-16 89.4 78 56.4
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 2.1e-11 73.9 32 93.8
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.3e-10 70.5 84 50.0
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.3e-08 64.7 173 25.4
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 3.7e-08 63.2 209 29.2
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 1.1e-07 61.6 145 29.0


User provided reference genes

Program Settings