Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 0.0e+00 1269.2 645 100.0
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.1e-232 809.3 666 67.1
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.9e-225 786.2 656 65.1
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 7.6e-222 774.2 660 62.9
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.3e-221 773.5 650 65.1
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.1e-220 770.4 656 63.6
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 3.2e-220 768.8 622 65.0
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 9.3e-220 767.3 654 63.6
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.6e-219 766.5 609 65.8
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 3.5e-219 765.4 660 62.9
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.3e-218 763.5 643 63.9
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.3e-218 762.7 600 68.0
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 3.9e-218 761.9 632 64.2
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 8.7e-218 760.8 658 62.5
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.5e-217 759.2 601 67.7
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 3.3e-217 758.8 650 62.6
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 1.3e-216 756.9 679 61.4
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 2.8e-216 755.7 600 67.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 3.7e-216 755.4 663 62.9
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 5.9e-214 748.0 657 62.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.3e-213 746.9 645 62.9
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.2e-213 746.1 664 61.7
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 2.2e-213 746.1 610 64.6
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.8e-213 745.3 645 62.9
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 8.5e-213 744.2 656 62.8
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.9e-212 743.0 662 61.9
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.2e-212 742.3 650 62.5
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.2e-212 741.9 665 62.0
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 4.6e-211 738.4 646 62.5
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 4.6e-211 738.4 646 62.5
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.0e-210 737.3 601 66.2
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.0e-210 737.3 605 65.3
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 1.8e-210 736.5 655 61.4
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.8e-210 736.5 664 61.1
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.1e-209 733.8 646 61.9
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.1e-209 733.8 648 61.9
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.5e-209 733.4 665 62.0
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.3e-209 731.9 679 59.8
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.2e-208 729.6 660 61.8
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 2.8e-208 729.2 608 63.0
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.7e-208 728.8 653 62.2
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 3.7e-208 728.8 660 61.4
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 4.8e-208 728.4 652 61.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 8.2e-208 727.6 670 58.5
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.4e-207 726.9 607 63.3
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.1e-207 725.7 662 61.0
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.9e-204 716.5 644 61.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 9.4e-204 714.1 598 65.1
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 7.9e-203 711.1 692 57.9
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 2.3e-202 709.5 563 66.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.0e-202 709.1 672 58.9
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 7.4e-201 704.5 671 58.7
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 6.3e-200 701.4 640 59.7
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 5.3e-199 698.4 599 61.9
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.2e-198 697.2 660 57.3
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.5e-198 696.8 644 60.7
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.0e-197 694.1 645 59.4
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.0e-197 694.1 653 59.1
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.4e-196 690.3 686 58.2
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 4.7e-195 685.3 653 58.7
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 5.2e-194 681.8 653 58.7
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 8.8e-194 681.0 668 56.1
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 3.3e-193 679.1 666 57.4
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.1e-191 674.1 611 61.0
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.4e-191 673.7 651 57.9
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.9e-188 663.3 679 56.0
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.5e-188 662.9 607 60.5
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.6e-187 660.2 628 56.5
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 5.2e-186 655.2 669 56.1
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.3e-184 650.6 585 60.2
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 4.1e-183 645.6 656 53.0
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.0e-181 641.0 606 59.2
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.0e-181 641.0 587 59.3
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.0e-181 641.0 607 55.8
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.2e-181 639.8 616 58.8
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 8.5e-181 637.9 520 61.5
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.5e-180 637.1 629 57.7
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 5.5e-180 635.2 655 56.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.2e-179 634.0 610 55.9
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.6e-179 633.6 657 54.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.0e-177 626.7 614 57.8
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 4.8e-176 622.1 666 55.0
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.8e-175 620.2 662 56.0
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.8e-175 620.2 607 54.9
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.8e-175 620.2 623 55.7
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.4e-175 619.8 604 56.1
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 2.0e-174 616.7 572 59.3
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 6.5e-173 611.7 605 56.0
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.6e-171 607.1 611 56.0
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.7e-171 605.5 506 63.2
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 6.1e-171 605.1 599 55.8
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 6.1e-171 605.1 649 52.7
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.3e-170 603.2 654 52.9
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 3.0e-170 602.8 667 52.8
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.2e-168 596.7 651 52.2
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 8.3e-168 594.7 444 69.8
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 1.4e-167 594.0 523 60.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.8e-167 593.6 572 57.0
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 2.4e-167 593.2 523 60.0
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.4e-167 593.2 601 54.9
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 7.0e-167 591.7 601 54.6
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.2e-166 590.9 605 54.4
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 7.8e-166 588.2 523 59.7
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 5.0e-165 585.5 616 53.6
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.1e-163 580.1 598 54.5
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 4.7e-163 578.9 600 54.5
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 8.0e-163 578.2 598 54.3
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.0e-161 573.5 599 54.6
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 3.4e-161 572.8 605 54.9
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.1e-159 567.8 583 55.1
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 1.1e-159 567.8 599 53.3
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 7.8e-158 561.6 569 55.5
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.3e-156 555.1 611 52.0
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 3.6e-155 552.7 575 53.7
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 9.9e-145 518.1 559 53.8
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 1.9e-143 513.8 640 47.5
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 7.1e-143 511.9 629 47.1
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 9.2e-143 511.5 617 47.6
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.9e-141 506.1 601 48.6
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 4.8e-115 419.5 635 40.8
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.3e-112 411.4 631 40.4
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 5.5e-111 406.0 636 43.2
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.6e-94 351.3 255 67.8
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 5.3e-90 336.3 556 38.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 1.7e-88 331.3 319 57.1
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 6.5e-88 329.3 237 67.9
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.4e-87 328.2 552 35.9
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.4e-87 328.2 628 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 4.7e-86 323.2 467 39.0
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 2.3e-85 320.9 412 42.7
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 4.1e-74 283.5 224 62.1
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 1.4e-69 268.5 332 46.7
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 2.7e-49 201.1 244 48.8
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.7e-48 198.4 133 70.7
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 8.7e-08 63.2 217 26.3
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.1e-07 62.8 139 36.7
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 5.6e-07 60.5 64 48.4
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 6.2e-06 57.0 165 32.1


User provided reference genes

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