Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 5.4e-128 461.1 244 100.0
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.5e-74 283.5 247 66.8
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 1.0e-70 270.8 249 59.4
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 1.8e-70 270.0 253 61.7
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 3.0e-70 269.2 245 62.9
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 1.5e-69 266.9 220 67.3
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 7.4e-69 264.6 243 62.1
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.3e-68 263.8 250 62.8
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.7e-68 263.5 243 61.7
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 4.8e-68 261.9 239 61.5
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 3.1e-67 259.2 190 70.5
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 7.0e-67 258.1 252 60.3
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 2.2e-65 253.1 243 59.3
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 8.5e-65 251.1 234 61.1
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 1.4e-64 250.4 242 61.2
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 2.5e-64 249.6 237 59.9
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 5.5e-64 248.4 227 61.7
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 5.5e-64 248.4 224 62.1
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 1.2e-63 247.3 234 58.1
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.2e-63 247.3 234 62.4
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 2.7e-63 246.1 229 60.7
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 6.1e-63 245.0 237 59.1
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 2.3e-62 243.0 248 59.3
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 3.0e-62 242.7 192 66.7
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 3.9e-62 242.3 242 58.3
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 3.9e-62 242.3 234 58.1
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 3.9e-62 242.3 240 59.6
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 5.2e-62 241.9 225 60.4
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 8.8e-62 241.1 192 66.1
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.1e-61 240.7 242 58.3
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 3.3e-61 239.2 193 65.8
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 4.4e-61 238.8 230 60.0
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 9.7e-61 237.7 193 64.2
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.3e-60 237.3 239 56.9
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 2.2e-60 236.5 242 59.5
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 2.2e-60 236.5 182 66.5
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.8e-60 236.1 233 57.9
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 4.8e-60 235.3 237 57.4
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 4.1e-59 232.3 193 65.8
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 5.3e-59 231.9 191 65.4
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 5.3e-59 231.9 191 62.3
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 9.1e-59 231.1 191 65.4
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 1.2e-58 230.7 191 61.8
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 2.6e-58 229.6 194 63.9
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 4.5e-58 228.8 194 62.9
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 7.7e-58 228.0 242 54.1
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.0e-57 227.6 193 63.7
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.0e-57 227.6 194 62.9
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.7e-57 226.9 217 62.2
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 5.0e-57 225.3 223 57.8
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 6.5e-57 224.9 194 63.4
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 6.5e-57 224.9 237 53.6
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 1.1e-56 224.2 213 62.9
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 3.2e-56 222.6 191 62.8
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 5.5e-56 221.9 236 57.6
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 2.1e-55 219.9 245 54.3
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 4.7e-55 218.8 243 53.5
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 1.8e-54 216.9 238 54.2
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 3.0e-54 216.1 251 51.8
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 4.0e-54 215.7 194 62.9
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 6.7e-54 214.9 183 62.3
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 2.0e-53 213.4 193 61.7
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 3.3e-53 212.6 193 61.1
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 9.7e-53 211.1 170 67.6
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 9.7e-53 211.1 221 55.7
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 1.3e-52 210.7 194 61.3
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 1.7e-52 210.3 173 63.0
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 2.2e-52 209.9 194 61.9
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 2.2e-52 209.9 194 61.9
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.2e-52 209.9 194 61.9
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.2e-52 209.9 223 54.7
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 6.3e-52 208.4 194 61.9
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 8.2e-52 208.0 194 61.9
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 8.2e-52 208.0 236 53.8
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 8.2e-52 208.0 236 52.5
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.8e-51 206.8 163 65.0
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 3.1e-51 206.1 232 53.9
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 7.0e-51 204.9 304 48.7
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.2e-50 204.1 158 67.1
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 1.3e-49 200.7 193 60.1
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 1.8e-46 190.3 237 51.9
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.8e-46 190.3 196 57.1
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 6.8e-46 188.3 181 57.5
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.7e-44 182.6 234 50.9
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.8e-43 180.3 186 54.3
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 3.1e-43 179.5 189 52.9
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 7.0e-43 178.3 169 60.4
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 9.1e-43 177.9 218 51.4
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 5.9e-42 175.3 181 54.1
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 3.3e-40 169.5 210 45.7
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 2.8e-39 166.4 199 53.3
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 6.1e-39 165.2 117 69.2
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 8.3e-36 154.8 171 48.5
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 1.2e-34 151.0 188 44.7
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 3.8e-33 146.0 197 48.2
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.3e-32 142.9 133 60.2
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 1.6e-31 140.6 187 46.5
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.7e-28 130.6 81 81.5
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 6.4e-28 128.6 94 69.1
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 2.3e-25 120.2 89 69.7
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.2e-21 107.8 73 71.2
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 1.3e-20 104.4 117 50.4
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.4e-19 100.9 222 35.6
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 5.4e-19 99.0 109 51.4
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 3.9e-09 66.2 54 63.0
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 5.2e-06 55.8 62 53.2


User provided reference genes

Program Settings