Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 7.4e-189 663.7 328 100.0
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 2.3e-97 359.8 350 54.3
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 3.9e-97 359.0 356 51.4
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 6.6e-97 358.2 303 57.4
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 8.7e-97 357.8 350 54.6
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 1.5e-96 357.1 301 57.8
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 2.5e-96 356.3 304 56.2
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 3.6e-95 352.4 303 56.1
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 6.2e-95 351.7 339 53.7
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 8.1e-95 351.3 344 52.3
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.8e-94 350.1 297 58.9
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 6.9e-94 348.2 342 51.5
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.2e-93 347.4 317 54.9
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 2.0e-93 346.7 316 54.1
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 2.6e-93 346.3 303 56.8
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 5.8e-93 345.1 310 54.2
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 5.8e-93 345.1 301 54.8
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 7.6e-93 344.7 297 57.2
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.3e-92 344.0 299 57.9
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 4.9e-92 342.0 302 57.3
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 8.4e-92 341.3 301 55.8
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.4e-91 339.7 303 54.5
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.2e-91 339.3 301 55.5
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 7.1e-91 338.2 321 54.5
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 7.1e-91 338.2 336 50.6
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 7.9e-90 334.7 301 54.5
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 2.3e-89 333.2 311 53.1
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 1.9e-88 330.1 319 53.0
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 9.6e-88 327.8 317 53.0
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 1.6e-87 327.0 336 50.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 2.1e-87 326.6 302 52.6
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 2.8e-87 326.2 351 50.7
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 4.8e-87 325.5 297 55.2
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 4.8e-87 325.5 298 54.4
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 6.2e-87 325.1 327 50.5
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 6.2e-87 325.1 348 50.9
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 8.1e-87 324.7 343 49.6
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 1.1e-86 324.3 343 50.7
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.4e-86 323.9 326 51.2
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.8e-86 323.6 302 52.0
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 3.1e-86 322.8 298 53.4
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 3.1e-86 322.8 319 51.1
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.2e-85 320.9 326 49.4
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 1.2e-85 320.9 331 49.8
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 2.6e-85 319.7 297 51.9
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 3.4e-85 319.3 298 52.7
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 4.5e-85 318.9 297 52.2
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 5.8e-85 318.5 333 50.2
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 7.6e-85 318.2 344 49.1
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 9.9e-85 317.8 341 49.3
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.3e-84 317.4 297 52.5
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 2.2e-84 316.6 287 55.1
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 2.9e-84 316.2 310 52.9
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 4.9e-84 315.5 326 50.0
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 4.9e-84 315.5 298 52.7
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 8.4e-84 314.7 298 52.3
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 1.4e-83 313.9 302 52.3
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.4e-83 313.9 293 50.9
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.4e-83 313.9 349 47.3
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 3.2e-83 312.8 326 50.0
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 3.2e-83 312.8 346 47.1
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 3.2e-83 312.8 300 51.3
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 5.5e-83 312.0 324 52.2
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 5.5e-83 312.0 332 49.1
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 2.7e-82 309.7 272 58.1
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 3.9e-81 305.8 301 52.2
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 3.9e-81 305.8 308 50.3
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 8.7e-81 304.7 298 51.7
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 8.7e-81 304.7 280 53.2
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 1.1e-80 304.3 314 49.7
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 2.5e-80 303.1 299 51.5
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 5.6e-80 302.0 275 55.6
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 5.6e-80 302.0 263 54.8
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 7.4e-80 301.6 340 47.4
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.6e-79 300.4 263 54.4
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.5e-77 293.9 313 49.2
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 5.8e-77 292.0 316 47.2
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.6e-77 291.6 303 49.5
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 4.9e-76 288.9 256 55.9
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 6.5e-76 288.5 273 51.6
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 8.4e-76 288.1 292 50.7
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.2e-74 284.3 302 50.3
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.7e-74 283.1 243 55.6
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.3e-73 280.0 243 54.7
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 3.0e-73 279.6 299 49.2
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 3.0e-73 279.6 246 56.9
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 1.1e-72 277.7 305 48.5
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.5e-72 277.3 298 47.3
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 9.6e-72 274.6 238 58.4
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 2.1e-71 273.5 329 45.6
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 2.8e-71 273.1 277 49.8
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.3e-64 249.6 276 45.7
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 9.7e-64 248.1 384 38.5
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 1.4e-62 244.2 295 43.4
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 1.8e-62 243.8 264 44.7
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 2.5e-59 233.4 308 44.5
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.2e-53 214.5 190 55.3
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 1.0e-52 211.5 212 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 4.8e-47 192.6 306 40.5
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 6.3e-47 192.2 302 40.4
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.7e-44 184.1 272 40.1
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 3.2e-43 179.9 296 38.2
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 1.1e-38 164.9 302 37.7
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 1.9e-35 154.1 359 31.5
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.8e-31 140.2 387 29.2
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 3.1e-30 136.7 166 45.2
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 5.0e-28 129.4 255 34.5
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.5e-27 125.9 152 42.1
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 4.7e-26 122.9 106 53.8
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 8.8e-25 118.6 118 49.2
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 6.3e-23 112.5 139 43.2
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 3.8e-20 103.2 330 30.0
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 2.8e-18 97.1 124 43.5
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 4.4e-16 89.7 66 62.1
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 7.5e-08 62.4 51 64.7


User provided reference genes

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