Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 7.6e-124 447.2 229 100.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 4.1e-93 345.1 226 74.8
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 6.9e-93 344.4 224 76.3
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 9.0e-93 344.0 229 74.7
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.9e-91 339.0 228 73.2
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 5.0e-91 338.2 228 71.1
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.5e-91 337.8 229 72.1
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 8.5e-91 337.4 229 72.1
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.9e-90 336.3 228 71.9
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.5e-90 334.7 227 73.1
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.5e-90 334.7 227 73.1
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.5e-90 334.7 227 73.1
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-89 333.6 225 72.9
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.6e-89 333.2 226 73.5
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 2.1e-89 332.8 225 72.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 2.1e-89 332.8 225 72.9
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.7e-89 332.4 227 72.7
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.0e-88 330.5 229 72.1
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.8e-88 329.7 226 72.1
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.8e-88 329.7 225 71.6
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.0e-88 328.9 224 73.2
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 5.1e-88 328.2 221 74.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 8.8e-88 327.4 220 74.5
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.1e-87 327.0 217 73.3
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 3.3e-87 325.5 221 72.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 4.3e-87 325.1 223 70.4
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 9.7e-87 323.9 229 72.9
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.3e-86 323.6 224 71.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.3e-86 323.6 220 72.3
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 1.3e-86 323.6 224 68.3
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.7e-86 323.2 223 68.6
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.2e-86 322.8 229 71.6
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 3.7e-86 322.0 226 70.4
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 3.7e-86 322.0 224 70.5
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 6.3e-86 321.2 224 67.9
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 8.2e-86 320.9 222 73.4
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 8.2e-86 320.9 225 68.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.1e-85 320.5 225 71.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.4e-85 320.1 225 69.8
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.4e-85 320.1 220 71.8
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.8e-85 319.7 218 70.6
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.8e-85 319.7 225 68.4
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.1e-85 318.9 225 71.1
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.1e-85 318.9 220 69.1
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.3e-85 318.2 229 70.3
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.5e-84 316.6 224 68.3
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.6e-84 315.8 221 71.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.6e-84 315.8 227 68.7
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.4e-84 315.5 225 68.0
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 3.4e-84 315.5 227 68.3
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.4e-84 315.5 220 71.4
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.4e-84 315.5 220 71.4
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 3.4e-84 315.5 225 68.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 4.5e-84 315.1 225 70.2
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 5.9e-84 314.7 230 68.7
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.0e-83 313.9 226 68.1
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.3e-83 313.5 222 70.3
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.9e-83 312.4 220 70.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 6.5e-83 311.2 223 69.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.5e-83 311.2 230 67.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 8.5e-83 310.8 224 69.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.2e-82 308.9 220 70.0
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 4.2e-82 308.5 226 68.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 5.5e-82 308.1 229 67.2
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.6e-81 306.6 221 69.7
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.1e-81 306.2 225 68.9
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.7e-81 305.8 224 66.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.6e-81 305.4 226 67.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.7e-81 305.1 221 67.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.4e-80 303.5 224 64.7
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.4e-80 303.5 229 67.2
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 3.0e-80 302.4 222 67.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 2.0e-79 299.7 224 66.1
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.4e-79 298.5 253 61.3
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.3e-78 297.0 229 62.4
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.3e-78 297.0 256 60.2
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.8e-78 295.8 224 64.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 3.7e-78 295.4 229 62.0
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.1e-77 293.9 229 62.4
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.1e-77 293.9 224 64.7
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 1.4e-77 293.5 203 73.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.1e-77 292.4 229 61.1
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 4.1e-77 292.0 203 70.9
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.3e-77 291.6 251 60.2
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.2e-75 286.2 225 68.0
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.9e-75 285.8 225 60.0
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 2.9e-75 285.8 225 60.0
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.9e-75 285.8 225 60.0
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.9e-75 285.8 229 63.8
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.8e-75 285.4 225 60.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.5e-75 284.3 208 65.9
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.5e-75 284.3 208 65.9
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.9e-74 283.1 229 60.7
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-74 282.7 225 59.1
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-74 282.7 225 59.1
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.5e-74 282.7 286 55.9
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 3.2e-74 282.3 229 59.0
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 4.2e-74 282.0 187 74.9
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 6.1e-73 278.1 226 62.8
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.0e-72 277.3 220 61.4
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 3.9e-72 275.4 197 68.0
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 8.8e-72 274.2 225 57.8
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 8.8e-72 274.2 227 64.8
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 4.4e-71 271.9 227 59.5
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 7.4e-71 271.2 225 56.9
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.2e-70 269.6 229 57.6
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.8e-70 269.2 229 56.8
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 4.8e-70 268.5 231 57.1
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.3e-70 268.1 229 57.6
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.1e-69 267.3 225 60.9
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.4e-69 266.9 224 59.8
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.4e-69 266.2 227 58.6
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.4e-69 266.2 221 59.3
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 7.0e-69 264.6 232 56.9
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 7.0e-69 264.6 232 56.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 9.1e-69 264.2 229 58.1
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-68 263.1 232 56.5
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-68 263.1 232 56.5
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.0e-68 263.1 232 56.5
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.5e-68 261.9 193 66.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.7e-65 251.9 189 67.2
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.0e-64 250.8 230 54.3
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.0e-64 250.8 230 54.3
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.3e-62 243.8 205 57.6
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.4e-61 240.4 193 63.2
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.0e-61 238.0 224 55.4
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 9.1e-61 237.7 200 56.0
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.2e-58 229.2 196 57.1
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 4.2e-58 228.8 152 70.4
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 7.2e-58 228.0 151 72.8
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.0e-56 224.2 161 68.3
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.4e-56 223.8 209 54.5
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.0e-56 222.2 238 53.8
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.0e-55 219.9 161 66.5
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 4.4e-55 218.8 221 48.9
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.5e-52 209.1 225 51.1
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 5.0e-51 205.3 180 56.7
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.5e-50 203.0 183 59.0
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 5.5e-50 201.8 218 47.7
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.7e-49 198.7 227 51.5
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.0e-48 197.6 211 45.5
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 5.2e-48 195.3 214 48.1
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.6e-47 193.0 151 57.0
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 9.8e-39 164.5 182 45.6
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.0e-36 156.8 121 64.5
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 6.0e-36 155.2 121 65.3
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 3.9e-35 152.5 117 62.4
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 6.2e-33 145.2 90 75.6
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.4e-32 144.1 125 59.2
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 4.0e-32 142.5 86 79.1
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.9e-26 123.6 224 33.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.1e-24 117.9 157 39.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-24 117.5 154 46.1
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-24 117.5 154 46.1
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 5.8e-23 112.1 75 69.3
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 1.6e-20 104.0 76 67.1
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-20 104.0 66 77.3
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.3e-18 95.9 80 58.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.7e-11 73.9 74 52.7
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 2.1e-09 67.0 50 62.0
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.0e-08 62.8 48 62.5
FAN09G3855 Fragaria x ananassa HOM05D001742 ORTHO05D001689 5.8e-07 58.9 210 26.2
FvH4_6g38810 Fragaria vesca HOM05D001742 ORTHO05D001689 1.3e-06 57.8 211 26.1
FAN14G2953 Fragaria x ananassa HOM05D001742 ORTHO05D001689 1.3e-06 57.8 211 26.1
FAN02G0905 Fragaria x ananassa HOM05D001742 ORTHO05D001689 1.7e-06 57.4 211 25.1
FAN05G3130 Fragaria x ananassa HOM05D001742 ORTHO05D001689 1.7e-06 57.4 211 25.1
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 6.4e-06 55.5 35 68.6


User provided reference genes

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