Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.2e-164 583.2 305 100.0
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.6e-97 360.1 214 90.7
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.9e-61 240.4 315 53.0
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 1.5e-58 230.7 308 54.5
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.8e-51 207.2 161 70.8
Eucgr.B00489 Eucalyptus grandis HOM05D002094 ORTHO05D007260 2.5e-50 203.4 145 79.3
Eucgr.C00650 Eucalyptus grandis HOM05D002094 ORTHO05D007260 3.3e-50 203.0 145 78.6
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 3.3e-50 203.0 299 49.8
Eucgr.B00488 Eucalyptus grandis HOM05D002094 ORTHO05D002113 4.3e-50 202.6 146 78.1
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 4.3e-50 202.6 319 50.2
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 4.8e-49 199.1 300 47.7
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 1.8e-48 197.2 316 46.8
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 4.5e-47 192.6 299 50.5
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.3e-46 191.0 316 45.6
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 1.7e-46 190.7 314 47.8
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 6.5e-46 188.7 306 46.1
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 6.5e-46 188.7 316 45.9
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 1.9e-45 187.2 271 49.8
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.5e-45 186.8 303 44.9
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 6.7e-43 178.7 155 67.1
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 1.9e-42 177.2 296 48.0
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 2.5e-42 176.8 273 47.3
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 7.4e-42 175.3 356 42.1
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 7.4e-42 175.3 306 46.1
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 6.3e-41 172.2 324 43.8
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 6.3e-41 172.2 345 42.3
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 8.2e-41 171.8 351 42.2
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 3.1e-40 169.9 313 42.5
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 5.3e-40 169.1 324 43.2
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 6.9e-40 168.7 353 41.6
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 2.6e-39 166.8 309 44.7
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 4.5e-39 166.0 314 41.4
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.0e-38 164.9 296 45.6
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 1.3e-38 164.5 292 45.5
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.9e-38 163.3 296 45.3
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 3.8e-38 162.9 308 43.5
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 5.0e-38 162.5 287 43.6
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.4e-37 161.0 294 45.6
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 2.1e-36 157.1 301 43.9
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 4.6e-36 156.0 181 58.6
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 6.1e-36 155.6 311 41.2
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 6.1e-36 155.6 311 41.2
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 7.9e-36 155.2 267 46.8
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.4e-35 154.5 311 41.2
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 1.4e-35 154.5 262 47.3
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 1.8e-35 154.1 293 43.0
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 2.3e-35 153.7 308 43.2
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 3.9e-35 152.9 294 43.9
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 5.1e-35 152.5 299 42.8
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 1.1e-34 151.4 300 42.7
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 1.1e-34 151.4 290 43.1
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 2.0e-34 150.6 294 42.9
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 4.4e-34 149.4 309 44.3
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 5.7e-34 149.1 314 41.4
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 7.4e-34 148.7 316 40.5
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 1.3e-33 147.9 294 43.2
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.7e-33 147.5 280 44.6
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 4.8e-33 146.0 304 41.8
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.3e-33 145.6 279 45.5
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 8.2e-33 145.2 279 45.2
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.8e-32 144.1 274 44.9
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 9.1e-32 141.7 317 40.1
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 9.1e-32 141.7 311 40.2
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 1.5e-31 141.0 297 43.1
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 2.6e-31 140.2 284 39.8
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 4.5e-31 139.4 297 42.4
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 5.9e-31 139.0 299 42.1
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 1.0e-30 138.3 159 57.9
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 2.9e-30 136.7 293 41.0
Eucgr.A02428 Eucalyptus grandis HOM05D006245 ORTHO05D007260 5.0e-30 136.0 85 87.1
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 1.4e-29 134.4 192 49.5
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 1.9e-29 134.0 303 40.9
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 1.9e-29 134.0 303 40.9
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 5.5e-29 132.5 269 42.8
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 7.2e-29 132.1 290 40.7
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 2.7e-28 130.2 294 39.1
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 4.7e-28 129.4 301 39.5
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 8.0e-28 128.6 309 39.8
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 8.0e-28 128.6 309 39.8
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 8.0e-28 128.6 309 39.8
Eucgr.I00119 Eucalyptus grandis HOM05D003680 ORTHO05D004264 8.0e-28 128.6 157 56.1
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 8.0e-28 128.6 302 35.1
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 1.4e-27 127.9 333 37.8
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 2.3e-27 127.1 317 39.4
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 3.0e-27 126.7 310 41.6
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 3.0e-27 126.7 309 38.5
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 2.0e-26 124.0 253 42.3
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 2.6e-26 123.6 166 50.6
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 5.7e-26 122.5 227 44.5
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 4.8e-25 119.4 212 43.9
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 8.2e-25 118.6 205 44.4
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 8.2e-25 118.6 172 49.4
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.4e-24 117.9 338 35.5
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 1.8e-24 117.5 154 51.3
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 1.8e-24 117.5 288 37.5
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 9.1e-24 115.2 228 41.7
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 1.2e-23 114.8 273 38.1
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 1.6e-23 114.4 213 42.7
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 2.0e-23 114.0 305 34.4
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 4.5e-23 112.8 197 44.2
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 7.7e-23 112.1 230 43.0
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 2.9e-22 110.2 235 42.6
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 6.5e-22 109.0 194 43.8
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 2.5e-21 107.1 245 41.2
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 3.2e-21 106.7 263 37.3
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 5.5e-21 105.9 322 37.6
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 5.5e-21 105.9 271 37.6
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 5.5e-21 105.9 241 42.3
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 7.2e-21 105.5 225 40.0
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.1e-20 104.0 219 40.2
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 3.6e-20 103.2 176 45.5
Eucgr.C01488 Eucalyptus grandis HOM05D000141 ORTHO05D000780 1.4e-19 101.3 65 80.0
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 1.8e-19 100.9 215 40.9
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 3.0e-19 100.1 281 36.7
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.5e-18 97.8 134 54.5
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 5.7e-18 95.9 305 37.0
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 5.7e-18 95.9 203 42.4
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 2.2e-17 94.0 256 39.1
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 4.8e-17 92.8 230 37.8
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 4.1e-16 89.7 60 75.0
Eucgr.G02291 Eucalyptus grandis HOM05D029373 ORTHO05D000780 7.7e-15 85.5 52 78.8
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 5.5e-13 79.3 307 31.6
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.6e-12 77.8 188 36.7
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.1e-12 77.4 51 74.5
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 6.8e-11 72.4 57 68.4
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 2.0e-10 70.9 81 59.3
ECA234G2998 Erigeron canadensis HOM05D006245 ORTHO05D007260 7.0e-08 62.4 133 39.1
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 3.5e-07 60.1 39 69.2
Atru.chr5.2854 Acer truncatum HOM05D006245 ORTHO05D007260 1.7e-06 57.8 139 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1662 Anthoceros agrestis HOM05D015270 ORTHO05D016504 1.7e-06 57.8 226 32.3


User provided reference genes

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