Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.3e-96 356.3 168 100.0
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.3e-75 286.6 168 76.8
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.4e-74 282.3 167 75.4
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.4e-74 282.3 167 75.4
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 4.0e-74 281.6 168 76.2
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 1.5e-73 279.6 168 76.2
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.6e-73 278.9 168 76.8
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.0e-72 276.9 168 73.8
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.9e-71 272.7 168 72.6
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.5e-71 272.3 168 73.2
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 4.2e-71 271.6 168 73.2
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 7.1e-71 270.8 167 71.3
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 9.3e-71 270.4 172 74.4
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.2e-70 270.0 168 72.6
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.1e-70 269.2 170 71.8
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 2.7e-70 268.9 169 72.2
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.3e-69 266.5 168 72.6
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.8e-69 266.2 163 73.6
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.8e-69 266.2 168 70.2
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 70.8
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.9e-69 265.0 168 70.8
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.9e-68 262.7 168 70.2
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 2.5e-68 262.3 168 69.6
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.5e-68 262.3 168 68.5
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.7e-68 261.2 168 67.9
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 9.6e-68 260.4 168 67.3
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 9.6e-68 260.4 168 67.3
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.6e-67 259.6 168 69.6
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.1e-67 259.2 179 65.9
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 8.2e-67 257.3 168 68.5
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.8e-66 256.1 168 70.8
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 5.3e-66 254.6 170 67.1
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.5e-65 253.1 168 66.1
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 2.0e-65 252.7 168 67.3
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.5e-65 251.5 168 66.1
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.3e-64 250.0 184 65.2
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 2.2e-64 249.2 170 65.3
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.4e-63 246.5 168 64.3
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.5e-63 245.7 170 64.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.5e-63 244.6 170 64.1
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 7.2e-63 244.2 170 67.6
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 9.3e-63 243.8 168 66.1
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.7e-62 242.3 168 61.9
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 64.3
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 6.1e-62 241.1 168 66.7
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 7.9e-62 240.7 168 66.1
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 1.0e-61 240.4 170 62.4
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 1.0e-61 240.4 168 66.1
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.3e-61 240.0 205 57.1
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.3e-61 239.2 168 65.5
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 2.3e-61 239.2 205 55.6
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 61.9
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 61.9
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 63.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 5.1e-61 238.0 168 60.1
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 59.5
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 61.3
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.1e-60 236.9 152 71.7
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 60.7
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 60.7
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 60.7
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 60.7
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.3e-60 235.0 168 60.7
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 61.3
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.3e-59 233.4 168 61.9
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.6e-59 233.0 141 75.9
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.2e-59 232.6 168 61.3
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 61.3
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 3.7e-59 231.9 168 59.5
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 58.9
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 4.8e-59 231.5 169 62.7
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.8e-58 229.6 201 55.2
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.1e-58 228.8 168 59.5
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 3.1e-58 228.8 168 59.5
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.1e-58 228.8 168 59.5
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 3.1e-58 228.8 169 60.9
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 3.1e-58 228.8 169 60.9
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 59.5
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 60.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 60.7
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 60.7
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 5.3e-58 228.0 237 50.2
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 5.3e-58 228.0 168 60.7
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 9.0e-58 227.3 168 58.9
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.2e-57 226.9 168 58.9
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.2e-57 226.9 168 60.1
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.2e-57 226.9 168 60.1
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 59.5
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 58.9
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 58.9
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 5.9e-57 224.6 168 59.5
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 7.7e-57 224.2 169 58.6
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 8.5e-56 220.7 168 58.3
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.9e-55 219.5 172 58.7
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.2e-55 218.8 165 57.6
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.7e-54 215.7 193 53.9
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.7e-54 215.7 167 56.3
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 2.7e-54 215.7 165 58.8
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 4.6e-54 214.9 168 57.7
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 6.1e-54 214.5 173 57.2
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 6.1e-54 214.5 189 52.9
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 3.0e-53 212.2 168 56.5
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.5e-52 209.9 182 52.7
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.0e-52 209.5 137 67.2
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.0e-52 209.5 169 58.0
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.0e-52 209.5 169 58.0
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 2.5e-52 209.1 154 58.4
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.5e-52 209.1 168 54.2
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 5.7e-52 208.0 190 52.1
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.2e-51 206.1 151 63.6
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 4.1e-50 201.8 168 54.8
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 6.9e-50 201.1 168 54.2
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.6e-49 199.1 168 54.2
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.7e-48 196.4 190 50.0
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 2.5e-47 192.6 140 66.4
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 9.4e-47 190.7 170 55.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 4.7e-46 188.3 168 55.4
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.1e-45 184.9 125 61.6
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.7e-43 178.7 145 54.5
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.1e-42 177.2 169 48.5
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 4.1e-42 175.3 125 68.0
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.5e-39 166.8 111 64.9
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 3.2e-39 165.6 168 50.6
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.6e-38 163.3 104 67.3
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 6.1e-38 161.4 169 45.6
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 8.0e-38 161.0 169 45.0
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 6.7e-37 157.9 186 44.1
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 6.7e-37 157.9 174 46.0
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.0e-36 156.4 173 45.1
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.3e-32 143.7 97 68.0
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-31 140.6 101 61.4
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 4.2e-31 138.7 168 42.9
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 6.1e-30 134.8 162 46.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 8.3e-27 124.4 107 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 9.1e-26 120.9 142 41.5
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 3.5e-25 119.0 171 37.4
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 4.5e-25 118.6 171 35.7
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 7.7e-25 117.9 184 36.4
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 8.5e-24 114.4 163 38.0
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.5e-23 113.6 86 65.1
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 9.8e-20 100.9 169 33.1
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.2e-19 99.8 171 32.7
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.4e-18 97.1 96 46.9
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 3.1e-18 95.9 75 56.0
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.4e-13 80.5 55 54.5
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 8.0e-06 54.7 141 28.4


User provided reference genes

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