Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 7.3e-107 390.6 199 100.0
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 2.1e-77 292.7 199 73.4
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 6.0e-77 291.2 199 73.4
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 2.3e-76 289.3 198 72.7
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.9e-75 286.2 200 74.0
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 5.7e-75 284.6 199 70.9
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.6e-74 283.1 199 70.9
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.1e-74 282.7 199 71.9
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.4e-73 279.3 199 69.8
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.4e-73 279.3 200 73.5
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.5e-72 276.6 197 68.5
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.9e-72 274.6 199 69.3
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.7e-71 273.1 197 66.5
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 2.2e-71 272.7 199 69.3
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.2e-71 272.7 201 68.7
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.2e-70 268.5 200 67.5
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 5.5e-70 268.1 199 67.8
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 7.2e-70 267.7 200 67.5
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.2e-69 266.9 200 67.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.2e-69 266.9 200 67.0
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 4.6e-69 265.0 199 65.8
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.3e-68 262.7 198 69.2
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 6.7e-68 261.2 184 71.2
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 8.7e-68 260.8 200 68.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 7.4e-67 257.7 200 65.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 7.4e-67 257.7 200 65.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 7.4e-67 257.7 200 65.0
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 9.7e-67 257.3 184 69.6
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.3e-66 256.9 187 69.0
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 2.8e-66 255.8 199 67.8
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 8.2e-66 254.2 199 66.3
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.4e-65 253.4 198 66.2
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.2e-64 250.4 199 63.8
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 7.7e-64 247.7 198 64.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.0e-63 247.3 198 66.2
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.0e-63 247.3 238 55.0
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.0e-63 247.3 200 63.5
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.7e-63 246.5 200 63.0
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 2.2e-63 246.1 200 64.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 5.0e-63 245.0 207 62.8
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 6.5e-63 244.6 206 62.6
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 8.5e-63 244.2 185 66.5
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.9e-62 243.0 199 60.8
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.5e-62 242.7 197 61.4
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.2e-62 242.3 198 63.1
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 5.5e-62 241.5 205 59.0
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 7.2e-62 241.1 199 62.8
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 9.4e-62 240.7 199 61.8
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 4.6e-61 238.4 199 61.3
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 7.9e-61 237.7 198 62.1
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.0e-60 237.3 199 60.3
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 3.0e-60 235.7 199 60.8
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.0e-60 235.7 205 57.6
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 8.8e-60 234.2 197 57.9
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.1e-59 233.8 184 63.6
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 5.7e-59 231.5 196 58.2
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 5.7e-59 231.5 169 69.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 7.4e-59 231.1 200 63.0
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.7e-58 228.8 185 61.1
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 3.7e-58 228.8 187 59.9
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 6.3e-58 228.0 155 72.9
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 8.2e-58 227.6 201 59.7
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.4e-57 226.9 196 56.1
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.1e-57 225.7 199 59.8
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 3.1e-57 225.7 197 58.4
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 5.3e-57 224.9 184 62.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 5.3e-57 224.9 184 63.6
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.5e-56 223.4 196 58.2
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.5e-56 223.4 197 57.9
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.0e-56 223.0 197 55.8
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.6e-56 222.6 197 57.4
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.6e-56 222.6 184 63.6
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 7.7e-56 221.1 197 56.3
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.0e-55 220.7 197 55.8
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 2.9e-55 219.2 181 61.3
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.8e-55 218.8 232 52.2
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 1.1e-54 217.2 197 55.8
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 4.2e-54 215.3 163 68.1
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 9.4e-54 214.2 197 54.8
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.2e-53 213.8 197 52.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.2e-53 213.8 190 59.5
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 2.7e-53 212.6 197 54.3
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.7e-53 211.8 184 61.4
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.1e-53 211.5 184 58.7
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.3e-52 209.5 200 56.0
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.9e-52 208.8 200 56.5
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 5.2e-52 208.4 199 55.8
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.3e-50 203.8 184 57.6
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 6.3e-50 201.4 248 48.4
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 4.5e-48 195.3 199 52.3
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 2.9e-47 192.6 145 69.0
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.2e-45 187.2 193 49.2
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 5.2e-44 181.8 204 48.0
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.5e-43 180.3 176 56.2
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.3e-42 174.9 135 64.4
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 8.2e-42 174.5 186 51.6
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.8e-41 173.3 162 56.8
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 2.4e-41 172.9 142 61.3
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.9e-39 166.0 192 46.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 8.5e-39 164.5 184 48.9
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 5.5e-38 161.8 145 58.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 6.1e-37 158.3 121 69.4
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.4e-35 152.1 117 70.9
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 4.8e-34 148.7 156 48.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.1e-33 147.5 184 43.5
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.6e-32 143.7 127 55.1
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.1e-30 137.5 145 49.7
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.8e-29 132.9 101 71.3
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.0e-28 131.0 144 48.6
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.0e-28 129.4 109 57.8
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.0e-27 126.7 184 37.0
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.7e-26 123.6 154 42.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.7e-26 123.6 87 73.6
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 6.3e-26 121.7 108 57.4
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 4.5e-24 115.5 108 56.5
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 3.8e-23 112.5 190 34.7
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 8.6e-23 111.3 80 67.5
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.6e-21 107.1 84 61.9
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.2e-18 96.7 84 56.0
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.9e-18 96.3 61 70.5
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.7e-15 87.0 119 43.7
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 9.5e-14 81.3 188 28.2
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 3.4e-11 72.8 73 49.3
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.4e-11 72.4 58 65.5
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 5.8e-11 72.0 77 49.4
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 9.8e-11 71.2 38 92.1
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.7e-08 63.2 47 61.7


User provided reference genes

Program Settings