Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1656.3 803 100.0
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1220.3 803 72.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1198.0 807 71.0
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1194.1 805 72.2
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1191.0 807 71.6
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1189.5 806 71.8
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1188.7 803 71.1
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1187.9 805 71.1
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1184.9 804 70.5
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1180.6 805 71.4
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1178.7 802 71.1
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1175.2 807 69.9
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1168.3 807 70.3
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1162.5 804 70.3
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1161.7 807 70.0
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 806 69.6
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 821 68.0
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1160.2 807 69.9
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1159.4 819 69.5
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1158.7 806 69.6
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1157.5 806 69.5
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1157.1 804 69.3
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1154.0 808 69.2
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1152.1 807 69.5
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1150.2 844 66.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1147.9 805 69.2
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1143.3 841 66.9
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1135.9 806 69.1
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1132.5 805 69.3
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1129.8 807 67.9
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1127.9 808 67.6
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1125.9 810 67.4
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1124.0 887 64.3
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1122.1 812 68.2
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1120.5 805 67.5
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1116.3 808 66.8
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1114.0 804 65.4
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1111.3 804 65.3
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 804 65.2
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1108.6 853 62.3
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1107.8 774 68.3
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1105.1 802 64.8
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1104.4 805 65.5
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1104.0 808 65.8
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1103.2 802 66.6
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1100.5 807 65.9
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1098.6 806 65.4
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1097.4 817 64.4
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1096.3 804 64.7
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1095.9 836 65.2
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1093.6 807 66.2
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1093.2 806 65.6
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1089.7 805 65.3
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1087.4 840 62.7
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1086.6 807 64.3
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1081.6 759 69.0
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1080.1 808 63.9
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1079.7 807 64.7
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1078.9 800 65.1
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1076.2 847 61.7
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 2.2e-311 1072.0 807 64.1
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 2.7e-311 1071.6 809 64.5
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 9.2e-310 1066.6 799 64.1
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 4.6e-309 1064.3 807 64.3
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 4.6e-309 1064.3 809 63.8
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 3.0e-308 1061.6 809 64.3
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 4.8e-306 1054.3 800 63.2
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 8.1e-306 1053.5 809 63.3
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 8.1e-306 1053.5 809 63.3
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.8e-305 1052.4 807 64.3
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 2.4e-305 1052.0 802 62.8
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 5.3e-305 1050.8 802 63.1
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 2.6e-304 1048.5 806 62.9
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 1.3e-303 1046.2 803 63.6
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 8.4e-303 1043.5 850 61.1
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 2.1e-301 1038.9 800 62.9
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 6.6e-300 1033.9 789 64.4
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.8e-298 1028.5 858 60.5
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.3e-295 1019.6 804 62.2
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 1.2e-293 1013.1 806 62.8
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.7e-293 1011.9 804 60.7
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 5.8e-288 994.2 807 60.0
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 4.9e-287 991.1 807 61.6
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 4.2e-286 988.0 806 58.8
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 5.5e-278 961.1 713 67.2
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 1.2e-272 943.3 721 65.3
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 6.3e-266 921.0 729 61.7
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.2e-246 855.5 804 54.2
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.8e-241 839.7 598 66.9
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.5e-238 830.1 615 67.0
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.0e-236 822.4 607 66.7
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.9e-214 750.0 615 58.9
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 5.1e-207 725.3 823 46.9
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 2.3e-204 716.5 595 59.7
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 2.4e-196 689.9 829 45.5
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 4.8e-189 665.6 825 43.5
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.7e-170 604.0 531 56.7
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.5e-166 590.9 459 61.7
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 7.7e-155 552.0 455 60.4
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 1.3e-146 524.6 595 45.7
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 8.5e-138 495.4 374 66.3
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.7e-136 490.3 458 53.3
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 4.5e-131 473.0 446 52.7
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.4e-127 461.5 399 58.9
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.4e-124 449.5 467 48.8
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 9.1e-124 448.7 314 66.9
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.0e-106 392.1 346 60.4
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 9.9e-94 349.0 191 78.5
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.7e-82 311.6 306 55.6
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 4.2e-76 290.4 238 61.8
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.6e-75 288.5 263 55.9
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.1e-72 278.1 509 36.9
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.1e-68 265.8 146 79.5
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 3.3e-65 254.2 149 76.5
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 9.6e-57 226.1 123 76.4
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 2.2e-53 214.9 192 52.6
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 2.1e-51 208.4 850 26.2
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 6.7e-50 203.4 144 60.4
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.3e-41 174.5 192 47.4
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 6.3e-40 170.2 95 75.8
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 5.5e-28 130.6 92 62.0
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.3e-21 109.4 54 83.3
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.2e-19 102.8 197 33.5
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 7.2e-12 77.0 116 37.9
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 4.4e-09 67.8 52 57.7
BcaC05g28338 Brassica carinata HOM05D004988 ORTHO05D018599 7.0e-07 60.5 50 56.0
TWI23G0118 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 7.0e-07 60.5 270 25.2
TWI59G1117 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 7.0e-07 60.5 270 25.9
SEGI_24077 Sequoiadendron giganteum HOM05D001597 ORTHO05D001512 1.2e-06 59.7 159 28.9
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 1.6e-06 59.3 159 27.0
Nitab4.5_0000200g0020 Nicotiana tabacum HOM05D001597 ORTHO05D001512 1.6e-06 59.3 159 27.7
TWI14G1198 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 1.6e-06 59.3 234 26.1
EL10Ac1g00326 Beta vulgaris HOM05D001597 ORTHO05D001512 2.0e-06 58.9 159 26.4
CARHR141530 Cardamine hirsuta HOM05D001597 ORTHO05D001512 2.0e-06 58.9 159 26.4
CDE02G3222 Ceratophyllum demersum HOM05D001597 ORTHO05D001512 2.0e-06 58.9 159 27.7
CDE08G1068 Ceratophyllum demersum HOM05D001597 ORTHO05D001512 2.0e-06 58.9 159 27.7
Sp4g28310 Schrenkiella parvula HOM05D001597 ORTHO05D001512 2.0e-06 58.9 159 26.4
AL5G43990 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 2.7e-06 58.5 171 25.7
Carub.0005s2829 Capsella rubella HOM05D001597 ORTHO05D001512 2.7e-06 58.5 171 25.7
Dinv32543 Davidia involucrata HOM05D001597 ORTHO05D001512 2.7e-06 58.5 159 27.0
Actinidia10094 Actinidia chinensis HOM05D001597 ORTHO05D001512 3.5e-06 58.2 159 27.7
A03p25530 Brassica napus HOM05D001597 ORTHO05D001512 3.5e-06 58.2 159 26.4
BraA03t11770Z Brassica rapa HOM05D001597 ORTHO05D001512 3.5e-06 58.2 159 26.4
vmacro13207 Vaccinium macrocarpon HOM05D001597 ORTHO05D001512 3.5e-06 58.2 175 26.3
AL4G45540 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 4.5e-06 57.8 159 26.4
AT2G46260 Arabidopsis thaliana HOM05D001597 ORTHO05D001512 4.5e-06 57.8 159 26.4
BcaC02g12518 Brassica carinata HOM05D001597 ORTHO05D001512 4.5e-06 57.8 159 26.4
BolC4t21825H Brassica oleracea HOM05D001597 ORTHO05D001512 4.5e-06 57.8 159 26.4
Nitab4.5_0005619g0030 Nicotiana tabacum HOM05D001597 ORTHO05D001512 4.5e-06 57.8 159 27.0
BcaB01g03233 Brassica carinata HOM05D001597 ORTHO05D001512 5.9e-06 57.4 159 26.4
CiPaw.01G070500 Carya illinoinensis HOM05D001597 ORTHO05D001512 5.9e-06 57.4 159 27.7
CsaV3_3G008330 Cucumis sativus L. HOM05D001597 ORTHO05D001512 5.9e-06 57.4 159 27.0
Thhalv10005840m.g Eutrema salsugineum HOM05D001597 ORTHO05D001512 5.9e-06 57.4 159 26.4
Lalb_Chr04g0261661 Lupinus albus HOM05D001597 ORTHO05D001512 5.9e-06 57.4 159 27.7
Rhsim07G0008200 Rhododendron simsii HOM05D001597 ORTHO05D001512 5.9e-06 57.4 175 26.3
Aa31LG10G15400 Aethionema arabicum HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
BcaB02g07367 Brassica carinata HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
A05p01530 Brassica napus HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
A07p25610 Brassica napus HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
C03p30450 Brassica napus HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
BolC3t15393H Brassica oleracea HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
BraA05t19149Z Brassica rapa HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
BraA07t30202Z Brassica rapa HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
Carub.0006s3622 Capsella rubella HOM05D001597 ORTHO05D001512 7.7e-06 57.0 289 26.0
ClCG03G014380 Citrullus lanatus HOM05D000563 ORTHO05D000536 7.7e-06 57.0 126 31.0
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 7.7e-06 57.0 133 32.3
FvH4_7g15752 Fragaria vesca HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 25.8
FAN06G5084 Fragaria x ananassa HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 25.8
Hma1.2p1_0384F.1_g140903 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 27.0
Hma1.2p1_0384F.1_g140909 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 27.0
MBI07_g11384_MAGBIO Magnolia biondii HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 26.4
RcHm_v2.0_Chr1g0358521 Rosa chinensis HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 25.8
SGA_v2.0_scaffold42G15940 Striga asiatica HOM05D002322 ORTHO05D002536 7.7e-06 57.0 136 30.9
GSVIVG01027032001 Vitis vinifera HOM05D001597 ORTHO05D001512 7.7e-06 57.0 159 25.8


User provided reference genes

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