Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 6.7e-82 307.4 163 100.0
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.2e-23 112.5 158 47.5
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.5e-20 103.6 99 58.6
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 9.5e-20 100.9 98 57.1
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 2.1e-19 99.8 99 55.6
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 2.8e-19 99.4 99 53.5
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 3.6e-19 99.0 99 55.6
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 4.7e-19 98.6 106 54.7
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 8.0e-19 97.8 99 54.5
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 8.0e-19 97.8 99 54.5
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 1.0e-18 97.4 96 57.3
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.0e-18 97.4 87 57.5
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.4e-18 97.1 113 51.3
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.4e-18 97.1 93 57.0
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.4e-18 97.1 96 55.2
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.8e-18 96.7 85 60.0
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 2.3e-18 96.3 85 57.6
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 3.1e-18 95.9 85 56.5
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 3.1e-18 95.9 99 55.6
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 4.0e-18 95.5 93 57.0
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 4.0e-18 95.5 99 53.5
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 5.2e-18 95.1 99 55.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 6.8e-18 94.7 84 57.1
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 6.8e-18 94.7 111 50.5
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 8.9e-18 94.4 118 49.2
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 8.9e-18 94.4 93 57.0
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 8.9e-18 94.4 93 57.0
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 8.9e-18 94.4 119 47.1
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 8.9e-18 94.4 93 55.9
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 8.9e-18 94.4 85 60.0
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.2e-17 94.0 93 57.0
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 1.2e-17 94.0 97 52.6
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.2e-17 94.0 102 51.0
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.5e-17 93.6 103 53.4
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.5e-17 93.6 95 53.7
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.5e-17 93.6 91 54.9
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 2.0e-17 93.2 92 53.3
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 2.0e-17 93.2 87 57.5
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 2.0e-17 93.2 85 54.1
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 2.6e-17 92.8 96 56.2
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 2.6e-17 92.8 96 56.2
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 2.6e-17 92.8 133 42.9
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 2.6e-17 92.8 143 40.6
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 2.6e-17 92.8 104 49.0
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 3.4e-17 92.4 93 51.6
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 3.4e-17 92.4 99 51.5
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 3.4e-17 92.4 85 54.1
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 3.4e-17 92.4 99 51.5
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 3.4e-17 92.4 102 51.0
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 4.4e-17 92.0 85 55.3
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 4.4e-17 92.0 80 61.2
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 4.4e-17 92.0 90 55.6
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 4.4e-17 92.0 106 48.1
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 4.4e-17 92.0 80 57.5
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 5.8e-17 91.7 113 49.6
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 7.5e-17 91.3 99 51.5
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 7.5e-17 91.3 98 51.0
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 7.5e-17 91.3 125 48.8
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 7.5e-17 91.3 118 47.5
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 9.8e-17 90.9 99 49.5
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 9.8e-17 90.9 80 60.0
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 9.8e-17 90.9 80 60.0
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 1.3e-16 90.5 83 56.6
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.3e-16 90.5 99 49.5
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 1.3e-16 90.5 103 53.4
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 1.3e-16 90.5 88 56.8
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 1.3e-16 90.5 115 47.8
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 1.7e-16 90.1 102 50.0
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.7e-16 90.1 84 54.8
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 2.2e-16 89.7 82 54.9
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 2.2e-16 89.7 94 53.2
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.2e-16 89.7 99 47.5
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 2.2e-16 89.7 102 48.0
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 2.9e-16 89.4 134 41.8
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.7e-16 89.0 80 58.8
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 3.7e-16 89.0 99 53.5
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 4.9e-16 88.6 85 55.3
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 4.9e-16 88.6 96 52.1
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.9e-16 88.6 106 50.9
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 4.9e-16 88.6 99 49.5
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 4.9e-16 88.6 91 51.6
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 6.4e-16 88.2 84 54.8
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 8.3e-16 87.8 106 47.2
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 8.3e-16 87.8 99 46.5
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.1e-15 87.4 93 51.6
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.4e-15 87.0 75 58.7
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.4e-15 87.0 138 38.4
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 1.4e-15 87.0 108 42.6
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 1.4e-15 87.0 84 53.6
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.9e-15 86.7 96 53.1
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 3.2e-15 85.9 90 48.9
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 4.1e-15 85.5 123 41.5
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 4.1e-15 85.5 99 44.4
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 4.1e-15 85.5 97 48.5
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.4e-15 85.1 93 51.6
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 7.0e-15 84.7 91 51.6
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 9.2e-15 84.3 125 41.6
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.2e-14 84.0 93 52.7
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 1.6e-14 83.6 91 50.5
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 1.6e-14 83.6 97 45.4
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.6e-14 83.6 99 46.5
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.6e-14 83.6 99 46.5
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.6e-14 83.6 99 46.5
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 2.0e-14 83.2 90 46.7
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 7.8e-14 81.3 99 42.4
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 7.8e-14 81.3 120 40.8
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 3.0e-13 79.3 99 43.4
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 4.3e-12 75.5 92 48.9
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 5.6e-12 75.1 87 49.4
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 2.1e-11 73.2 92 47.8
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 2.8e-11 72.8 78 51.3
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 3.6e-11 72.4 90 46.7
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.1e-10 69.3 106 41.5
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 3.1e-10 69.3 139 36.7
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 1.5e-09 67.0 102 41.2
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.4e-07 60.5 101 37.6
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 9.2e-07 57.8 69 42.0
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 7.8e-06 54.7 45 62.2


User provided reference genes

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