Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 3.4e-158 561.6 279 100.0
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.6e-134 482.3 272 83.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 2.2e-133 479.2 277 83.8
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 4.9e-133 478.0 279 81.0
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 3.2e-132 475.3 272 82.0
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 3.2e-132 475.3 273 82.1
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 5.4e-132 474.6 272 81.6
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.2e-131 473.4 272 82.7
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.6e-131 473.0 272 82.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.6e-131 473.0 272 81.6
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.1e-131 472.6 272 82.4
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.1e-131 472.6 273 82.4
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.7e-131 472.2 277 80.9
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 7.8e-131 470.7 271 81.5
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.0e-130 470.3 271 82.3
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.0e-130 470.3 278 81.7
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.0e-130 470.3 274 82.1
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.0e-130 470.3 272 80.9
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.3e-130 469.9 274 80.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.3e-130 469.9 272 80.5
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.3e-130 469.9 273 81.3
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 5.1e-130 468.0 272 82.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 6.6e-130 467.6 271 80.8
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 6.6e-130 467.6 272 80.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 8.6e-130 467.2 273 82.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 8.6e-130 467.2 272 81.2
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.1e-129 466.8 274 81.0
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.1e-129 466.8 270 81.1
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.1e-129 466.8 272 81.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.5e-129 466.5 272 81.2
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.5e-129 466.5 272 81.2
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.5e-129 466.5 272 81.2
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 1.9e-129 466.1 273 81.0
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 3.3e-129 465.3 271 80.4
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 3.3e-129 465.3 277 79.1
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 4.3e-129 464.9 272 81.2
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 4.3e-129 464.9 271 81.9
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 5.6e-129 464.5 271 80.1
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 5.6e-129 464.5 274 79.9
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 5.6e-129 464.5 271 79.7
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 7.3e-129 464.2 271 79.7
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.2e-128 463.4 271 80.4
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 3.6e-128 461.8 276 79.3
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 6.2e-128 461.1 271 81.2
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 6.2e-128 461.1 277 78.3
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.4e-127 459.9 272 80.5
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.8e-127 459.5 272 80.9
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 80.8
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 80.1
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 80.1
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.8e-127 459.5 272 79.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.1e-127 458.8 273 82.1
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.1e-127 458.8 273 82.1
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 5.2e-127 458.0 271 79.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 6.8e-127 457.6 274 79.6
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 6.8e-127 457.6 272 80.1
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 6.8e-127 457.6 271 80.4
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 8.9e-127 457.2 271 79.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 8.9e-127 457.2 271 79.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 4.4e-126 454.9 272 80.1
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 4.4e-126 454.9 272 79.8
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 5.8e-126 454.5 272 80.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 5.8e-126 454.5 274 78.5
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.8e-126 454.5 271 80.1
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-125 453.4 277 77.3
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-125 452.6 272 78.7
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.2e-125 452.6 272 79.0
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 3.8e-125 451.8 272 78.7
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 3.8e-125 451.8 257 82.9
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 3.8e-125 451.8 277 78.0
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 4.9e-125 451.4 272 78.3
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 8.4e-125 450.7 271 78.6
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 8.4e-125 450.7 272 79.4
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-124 450.3 272 78.3
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.1e-124 450.3 271 78.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.4e-124 449.9 271 78.2
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 3.2e-124 448.7 272 78.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 3.2e-124 448.7 271 77.9
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.2e-124 448.7 262 81.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 4.1e-124 448.4 271 78.2
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 4.1e-124 448.4 306 72.2
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.2e-123 446.8 272 76.8
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.0e-122 443.7 270 76.7
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.3e-122 442.6 272 75.7
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 8.6e-122 440.7 304 71.7
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.3e-121 438.7 263 77.9
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 7.3e-121 437.6 272 75.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 9.6e-121 437.2 276 76.1
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.1e-120 436.0 274 74.8
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 8.1e-120 434.1 271 75.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 8.1e-120 434.1 272 74.6
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.8e-119 433.0 301 70.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.0e-118 429.5 273 74.7
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.9e-117 424.9 285 73.3
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 5.4e-116 421.4 272 73.9
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 6.0e-115 417.9 271 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 5.1e-114 414.8 271 69.4
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 4.3e-113 411.8 271 69.0
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.4e-111 406.8 242 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.8e-111 406.4 271 68.6
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.0e-110 402.9 383 55.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.5e-110 401.7 272 73.2
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 2.4e-108 396.0 247 76.5
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 4.2e-108 395.2 224 83.0
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.5e-107 392.1 245 75.5
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 7.4e-105 384.4 271 66.4
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.1e-103 379.0 222 82.9
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 2.0e-102 376.3 271 70.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.1e-100 370.5 272 64.3
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.5e-100 368.2 251 73.3
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 4.3e-97 358.6 274 62.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.2e-94 350.5 221 77.4
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 2.2e-93 346.3 197 84.3
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.8e-90 336.7 271 57.9
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 4.3e-89 332.0 295 55.3
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 3.4e-86 322.4 274 59.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 4.5e-86 322.0 274 60.6
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.7e-85 320.1 274 60.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 3.3e-81 305.8 185 77.8
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.8e-79 300.1 275 56.7
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.6e-78 296.2 246 63.0
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 8.5e-77 291.2 276 52.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.1e-75 286.6 168 79.8
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.3e-73 279.3 274 53.3
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 8.2e-72 274.6 159 81.1
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 7.7e-70 268.1 152 86.8
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 2.9e-69 266.2 165 78.2
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 5.9e-62 241.9 210 60.0
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.1e-52 211.1 275 45.8
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.1e-51 206.8 156 66.0
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 4.0e-50 202.6 272 43.4
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.7e-48 196.1 274 44.5
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.0e-47 191.8 178 57.9
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 3.7e-40 169.5 159 60.4
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 9.8e-33 144.8 96 71.9
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.2e-31 139.8 185 44.9
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.1e-28 131.3 261 36.8
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.9e-28 130.6 92 66.3
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 4.3e-28 129.4 93 62.4
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.7e-27 125.9 269 33.8
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.3e-26 123.6 137 48.9
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.0e-25 120.6 137 48.2
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 3.7e-24 116.3 98 60.2
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.5e-20 104.4 73 68.5
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.1e-15 88.2 58 69.0
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.5e-12 77.0 89 48.3
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 7.3e-12 75.5 49 73.5
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.1e-11 73.9 45 75.6
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 1.4e-07 61.2 42 76.2


User provided reference genes

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