Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.6e-83 312.0 155 100.0
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.1e-52 208.8 155 70.3
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 8.7e-31 137.5 163 50.3
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.6e-27 125.9 164 47.6
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 8.4e-26 120.9 165 44.2
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 2.5e-25 119.4 164 43.9
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 3.2e-25 119.0 165 45.5
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 6.0e-24 114.8 165 43.0
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 6.0e-24 114.8 163 42.3
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.1e-22 110.5 165 40.6
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.5e-22 110.2 158 42.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.3e-22 108.6 165 40.6
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.7e-22 108.2 165 40.6
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 5.7e-22 108.2 165 40.6
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 9.6e-22 107.5 160 44.4
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 2.1e-21 106.3 162 42.0
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.8e-21 105.9 159 44.7
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.8e-21 105.9 159 44.7
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 2.8e-21 105.9 167 41.3
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 3.7e-21 105.5 163 42.3
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.7e-21 105.5 164 40.9
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 3.7e-21 105.5 163 41.1
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 4.8e-21 105.1 165 41.8
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 6.2e-21 104.8 164 40.9
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.1e-20 104.0 165 39.4
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-20 103.2 159 43.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.4e-20 102.8 161 38.5
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.4e-20 102.8 165 38.8
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.1e-20 102.4 161 38.5
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 4.0e-20 102.1 164 42.1
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 6.9e-20 101.3 153 44.4
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.0e-20 100.9 161 37.9
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.2e-19 100.5 159 40.3
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.5e-19 100.1 163 39.9
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.8e-19 98.2 161 40.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.0e-18 97.4 166 39.8
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.7e-18 96.7 165 40.0
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.7e-18 96.7 158 38.6
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 2.2e-18 96.3 163 36.8
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 2.2e-18 96.3 162 37.0
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.9e-18 95.9 158 39.2
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.9e-18 95.9 153 39.9
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.8e-18 95.5 171 40.4
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 3.8e-18 95.5 152 41.4
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 3.8e-18 95.5 167 36.5
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.5e-18 94.7 164 36.6
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 8.4e-18 94.4 161 37.3
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 8.4e-18 94.4 168 39.3
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.1e-17 94.0 169 40.2
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 1.1e-17 94.0 142 41.5
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.4e-17 93.6 165 40.6
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.4e-17 93.6 157 39.5
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.9e-17 93.2 159 40.3
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 3.2e-17 92.4 153 39.2
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.2e-17 92.4 163 36.2
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.2e-17 92.4 158 39.2
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 4.2e-17 92.0 160 41.2
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 5.5e-17 91.7 153 39.2
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 7.1e-17 91.3 152 40.1
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 7.1e-17 91.3 164 36.6
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 9.3e-17 90.9 160 38.8
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.2e-16 90.5 159 34.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.2e-16 90.5 156 37.2
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.6e-16 90.1 165 43.0
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.6e-16 90.1 154 37.7
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.6e-16 90.1 156 38.5
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 2.1e-16 89.7 158 36.1
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.1e-16 89.7 156 37.8
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 2.1e-16 89.7 156 38.5
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.7e-16 89.4 171 38.6
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.5e-16 89.0 161 37.3
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 3.5e-16 89.0 152 38.2
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 4.6e-16 88.6 161 38.5
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.6e-16 88.6 165 35.8
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.6e-16 88.6 165 35.8
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 6.1e-16 88.2 125 40.0
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 6.1e-16 88.2 169 37.3
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.0e-15 87.4 163 35.0
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.3e-15 87.0 161 37.9
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.3e-15 87.0 151 38.4
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.8e-15 86.7 177 35.6
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.0e-15 85.9 179 35.8
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 3.9e-15 85.5 160 36.2
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 5.1e-15 85.1 159 37.7
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 6.7e-15 84.7 151 37.1
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 8.7e-15 84.3 172 37.2
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.1e-14 84.0 170 34.1
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.5e-14 83.6 162 39.5
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.5e-14 83.6 162 39.5
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.5e-14 83.6 161 37.9
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 3.3e-14 82.4 151 35.8
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.3e-14 82.0 161 36.0
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 5.7e-14 81.6 164 39.0
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 5.7e-14 81.6 127 40.2
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 7.4e-14 81.3 176 34.7
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.8e-13 79.3 183 33.9
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 3.7e-13 79.0 151 33.8
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 6.3e-13 78.2 152 34.9
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 6.3e-13 78.2 152 34.9
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 6.3e-13 78.2 152 34.9
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 6.3e-13 78.2 152 34.9
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 6.3e-13 78.2 163 38.7
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 6.3e-13 78.2 143 41.3
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 8.2e-13 77.8 155 39.4
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 1.1e-12 77.4 152 32.2
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.4e-12 77.0 162 35.2
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 1.4e-12 77.0 170 34.1
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.8e-12 76.6 151 35.1
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.8e-12 76.6 151 32.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.8e-12 76.6 152 34.2
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 1.8e-12 76.6 139 40.3
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.8e-12 76.6 122 41.0
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.4e-12 76.3 155 38.1
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 2.4e-12 76.3 163 38.7
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.4e-12 76.3 160 37.5
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.4e-12 76.3 155 36.8
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.4e-12 76.3 155 36.8
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 4.1e-12 75.5 152 34.2
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 4.1e-12 75.5 164 37.8
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.9e-12 74.7 157 36.9
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 9.0e-12 74.3 171 34.5
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.6e-11 72.8 137 35.8
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 3.4e-11 72.4 151 35.1
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.9e-11 71.6 153 33.3
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 7.7e-11 71.2 151 34.4
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.0e-10 70.9 161 32.3
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.1e-09 67.4 159 32.7
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.9e-09 66.6 155 34.8
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.2e-09 65.9 162 34.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 4.2e-09 65.5 150 37.3
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.1e-08 63.2 152 32.9
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.7e-08 62.8 102 41.2
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 7.9e-08 61.2 148 35.8
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-07 60.5 151 28.5
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.3e-07 59.7 174 33.3
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.0e-07 59.3 158 30.4
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.9e-07 58.9 153 32.0
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 3.9e-07 58.9 103 39.8
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 8.8e-07 57.8 155 31.6
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-06 57.4 158 31.0
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.1e-06 57.4 125 34.4
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.5e-06 57.0 81 46.9
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-06 57.0 167 30.5
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 2.5e-06 56.2 113 38.1
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.3e-06 55.8 161 28.0
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.3e-06 55.5 119 32.8
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.3e-06 55.5 173 30.1
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 7.4e-06 54.7 128 32.0
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 9.7e-06 54.3 149 28.9


User provided reference genes

Program Settings