Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 7.1e-277 956.8 551 100.0
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 9.9e-61 238.8 272 49.6
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.9e-59 234.6 422 40.0
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 2.1e-58 231.1 244 50.4
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 8.6e-57 225.7 414 41.8
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.1e-56 225.3 437 37.5
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 2.1e-55 221.1 350 42.6
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 6.2e-55 219.5 430 38.4
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 5.2e-54 216.5 362 41.2
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 1.3e-52 211.8 300 46.0
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.4e-51 208.4 398 39.7
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 2.4e-51 207.6 438 37.9
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 7.1e-51 206.1 362 40.1
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 7.1e-51 206.1 425 38.1
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 7.1e-51 206.1 425 38.1
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 9.2e-51 205.7 405 38.8
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 4.6e-50 203.4 393 37.9
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 2.3e-49 201.1 386 38.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.9e-48 198.0 433 35.6
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.5e-48 197.6 399 37.8
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 3.3e-48 197.2 325 41.8
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 3.3e-48 197.2 261 43.7
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 4.3e-48 196.8 455 37.4
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 5.6e-48 196.4 180 58.3
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 5.6e-48 196.4 264 45.5
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-47 195.3 250 43.6
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 2.1e-47 194.5 386 36.5
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 2.8e-47 194.1 395 39.5
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.2e-45 188.7 425 34.8
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.6e-45 187.6 447 35.1
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 3.4e-45 187.2 404 38.4
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 5.8e-45 186.4 215 47.9
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 9.9e-45 185.7 255 42.7
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.7e-44 184.9 220 48.2
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 2.9e-44 184.1 258 43.0
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 8.4e-44 182.6 297 40.7
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.4e-43 181.8 351 40.2
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 7.1e-43 179.5 427 35.1
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 6.0e-42 176.4 372 34.9
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.1e-40 172.2 259 42.5
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 3.3e-40 170.6 436 33.7
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 5.6e-40 169.9 432 32.2
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.6e-39 168.3 285 38.2
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.1e-38 165.6 376 33.0
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 5.3e-38 163.3 431 33.2
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 6.9e-38 162.9 451 35.0
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 9.0e-38 162.5 285 38.2
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 1.2e-37 162.2 407 32.9
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.0e-37 161.4 424 32.5
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 3.4e-37 160.6 198 44.4
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 4.5e-37 160.2 249 41.4
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 4.5e-37 160.2 226 41.2
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 4.5e-37 160.2 249 37.3
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 5.8e-37 159.8 226 41.2
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 5.8e-37 159.8 198 48.0
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 7.6e-37 159.5 441 33.8
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 7.6e-37 159.5 226 39.8
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.7e-36 158.3 338 37.6
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 2.2e-36 157.9 250 40.8
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.2e-36 157.9 358 34.4
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.9e-36 156.8 340 36.8
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 6.4e-36 156.4 248 39.9
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 8.4e-36 156.0 280 37.1
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 8.4e-36 156.0 398 35.9
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 8.4e-36 156.0 358 34.4
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 2.4e-35 154.5 450 31.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 9.3e-35 152.5 412 35.7
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.2e-34 152.1 250 36.8
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 6.0e-34 149.8 232 42.2
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.8e-33 148.3 250 40.8
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 2.3e-33 147.9 236 41.1
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.0e-33 147.5 244 39.8
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 5.1e-33 146.7 242 38.0
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 1.1e-32 145.6 411 33.8
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 1.5e-32 145.2 437 31.8
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.3e-32 143.7 261 40.2
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 7.4e-32 142.9 452 30.1
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 8.1e-31 139.4 461 29.5
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 4.0e-30 137.1 261 37.5
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 9.0e-30 136.0 396 32.6
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 3.4e-29 134.0 237 40.1
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 3.4e-29 134.0 393 33.6
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 5.8e-29 133.3 318 35.2
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.1e-27 129.0 212 39.2
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.4e-27 128.6 245 35.5
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 4.2e-27 127.1 207 40.1
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 9.3e-27 125.9 239 36.8
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 9.3e-27 125.9 289 33.2
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.1e-26 124.8 246 37.4
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 7.9e-26 122.9 275 34.2
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.0e-25 122.5 211 39.8
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 2.3e-25 121.3 203 38.4
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 5.1e-25 120.2 185 44.9
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.1e-24 119.0 224 37.9
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.5e-24 117.9 189 40.2
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.5e-24 117.9 376 30.1
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.3e-24 117.5 403 31.8
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 4.3e-24 117.1 393 34.4
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 5.6e-24 116.7 181 39.2
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 5.6e-24 116.7 368 29.9
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 3.1e-22 110.9 223 34.5
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 6.9e-22 109.8 425 28.0
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 6.9e-22 109.8 211 34.6
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 9.0e-22 109.4 289 30.8
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 9.0e-22 109.4 382 29.6
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 2.6e-21 107.8 223 34.1
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.4e-21 107.5 373 28.4
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 4.5e-21 107.1 334 30.5
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 8.4e-20 102.8 199 37.7
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 1.9e-19 101.7 319 31.3
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.2e-19 100.5 266 30.1
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 5.5e-19 100.1 456 27.4
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 4.6e-18 97.1 420 27.1
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 7.9e-18 96.3 395 29.9
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 3.0e-17 94.4 408 28.2
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.5e-16 91.3 166 37.3
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 4.3e-16 90.5 168 37.5
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 2.4e-14 84.7 168 35.7
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 4.5e-13 80.5 122 42.6
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.7e-13 79.7 132 37.1
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.1e-11 75.9 355 26.5
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 2.5e-08 64.7 107 38.3
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 9.7e-08 62.8 397 26.7
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.3e-07 62.4 107 39.3
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.7e-07 62.0 137 32.1
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 8.2e-07 59.7 373 25.7
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 1.8e-06 58.5 300 27.0
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 5.3e-06 57.0 134 35.1
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 6.9e-06 56.6 117 35.9


User provided reference genes

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