Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.8e-229 798.9 396 100.0
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.7e-171 606.3 314 93.6
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 3.2e-138 495.7 353 70.3
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.1e-135 487.3 366 65.8
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.1e-135 487.3 366 66.1
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 7.4e-135 484.6 322 70.2
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 1.7e-134 483.4 333 70.3
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.8e-134 482.6 345 67.8
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 3.7e-134 482.3 322 69.9
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.8e-133 479.9 334 68.6
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 2.4e-133 479.6 353 68.6
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.3e-133 478.4 330 69.4
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 5.3e-133 478.4 368 64.7
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 1.2e-132 477.2 333 69.1
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.5e-132 476.9 327 67.9
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 4.5e-132 475.3 344 66.3
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 5.9e-132 474.9 351 67.0
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 7.7e-132 474.6 398 62.6
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 1.0e-131 474.2 335 67.8
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 8.5e-131 471.1 344 66.6
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.1e-130 470.7 349 66.5
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.2e-130 469.2 327 67.3
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 4.2e-130 468.8 330 70.3
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 9.4e-130 467.6 344 68.6
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.2e-129 467.2 332 66.3
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.6e-129 466.8 344 66.6
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 4.7e-129 465.3 348 65.8
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 7.9e-129 464.5 345 66.1
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 5.1e-128 461.8 328 67.4
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 6.7e-128 461.5 347 64.6
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 1.5e-127 460.3 326 66.6
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 1.5e-127 460.3 332 66.6
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 1.5e-127 460.3 373 61.7
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 2.6e-127 459.5 331 67.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.6e-127 459.5 325 66.8
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.3e-127 459.1 347 64.6
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 4.4e-127 458.8 326 66.3
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 4.4e-127 458.8 342 65.8
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 2.2e-126 456.4 345 64.6
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 3.7e-126 455.7 328 67.4
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.8e-125 453.4 325 65.5
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.4e-125 453.0 327 67.6
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 4.1e-125 452.2 334 65.6
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 5.3e-125 451.8 350 64.6
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 7.7e-124 448.0 381 59.1
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 7.7e-124 448.0 328 66.2
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 2.2e-123 446.4 326 67.8
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 6.5e-123 444.9 344 62.5
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 6.5e-123 444.9 338 64.8
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 1.9e-122 443.4 337 63.2
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 2.5e-122 443.0 303 70.0
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 5.5e-122 441.8 328 64.0
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.2e-121 440.7 331 63.4
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 3.6e-121 439.1 325 65.8
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 4.7e-121 438.7 341 63.3
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.4e-120 437.2 322 64.9
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.8e-120 436.8 338 62.7
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.8e-120 436.8 338 62.7
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 2.3e-120 436.4 346 62.1
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.3e-120 436.4 377 59.2
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 3.0e-120 436.0 323 64.1
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 3.9e-120 435.6 396 57.1
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 3.9e-120 435.6 344 62.2
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 6.7e-120 434.9 344 61.6
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.1e-119 434.1 336 61.9
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 1.5e-119 433.7 323 64.1
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.0e-119 433.3 328 64.3
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 5.7e-119 431.8 340 61.2
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 5.7e-119 431.8 332 62.3
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 5.7e-119 431.8 328 63.1
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 7.4e-119 431.4 294 69.0
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.8e-118 429.5 338 61.2
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 8.2e-118 427.9 331 61.0
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 1.8e-117 426.8 344 61.3
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 3.1e-117 426.0 326 63.2
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 5.3e-117 425.2 339 60.5
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 7.0e-117 424.9 335 63.6
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 1.2e-116 424.1 336 62.5
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 1.6e-116 423.7 338 61.2
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 7.7e-116 421.4 338 61.5
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 1.0e-115 421.0 328 63.4
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 1.0e-115 421.0 322 63.7
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.5e-114 417.2 292 68.5
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 2.5e-114 416.4 338 61.2
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 2.1e-113 413.3 286 67.8
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.4e-112 410.6 327 62.1
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 2.0e-108 396.7 248 75.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.5e-108 396.0 318 61.0
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.9e-107 392.9 330 60.6
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 3.2e-106 389.4 351 55.6
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.4e-104 384.0 338 57.4
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 5.2e-104 382.1 292 63.0
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 1.5e-98 364.0 319 57.4
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 5.5e-98 362.1 347 55.9
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.0e-96 357.8 261 66.7
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.5e-90 337.4 283 55.8
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 5.6e-90 335.5 243 63.0
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.0e-88 331.3 323 52.6
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 1.2e-81 307.8 334 47.6
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.0e-79 300.4 312 54.2
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 4.9e-78 295.8 249 61.4
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 8.3e-78 295.0 251 59.8
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 1.3e-75 287.7 444 38.3
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.3e-75 287.7 453 37.5
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 5.1e-75 285.8 321 47.0
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.1e-72 278.1 271 56.5
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 3.4e-71 273.1 311 50.8
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 5.8e-71 272.3 310 49.7
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 5.4e-69 265.8 219 61.2
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 6.0e-68 262.3 221 62.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.2e-63 248.1 421 35.6
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 2.9e-62 243.4 190 62.6
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 5.4e-61 239.2 344 41.9
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 5.3e-56 222.6 156 64.7
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 3.5e-52 209.9 124 77.4
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.1e-50 204.9 154 65.6
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 2.8e-49 200.3 369 34.7
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 3.4e-47 193.4 120 75.0
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 1.9e-45 187.6 497 28.6
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 4.6e-44 183.0 193 53.4
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 2.8e-41 173.7 415 32.3
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 3.7e-41 173.3 125 60.8
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 4.5e-39 166.4 108 75.0
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 3.5e-36 156.8 123 57.7
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 8.4e-30 135.6 85 74.1
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 3.5e-28 130.2 126 59.5
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.8e-27 127.9 90 64.4
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.4e-21 108.2 63 81.0
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 3.2e-21 107.1 65 75.4
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 6.7e-11 72.8 119 38.7
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 2.6e-10 70.9 70 54.3
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 9.1e-08 62.4 170 30.0
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 9.1e-08 62.4 170 30.0
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 9.1e-08 62.4 170 30.0
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.2e-07 62.0 180 29.4
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.5e-07 61.6 170 30.0
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 7.7e-07 59.3 170 28.2
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.7e-06 58.2 167 29.3
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 3.8e-06 57.0 104 34.6


User provided reference genes

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