Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.1e-286 989.2 486 100.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.0e-223 778.5 474 79.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 5.2e-223 777.7 469 79.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 4.4e-222 774.6 485 77.7
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-221 773.1 474 78.1
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.9e-221 771.9 466 79.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.9e-221 771.9 480 78.1
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 2.9e-221 771.9 469 79.7
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.9e-221 771.2 466 79.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.3e-221 770.4 466 79.4
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.2e-220 768.5 472 78.2
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 7.0e-220 767.3 472 78.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-219 766.5 472 78.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 3.5e-219 765.0 480 78.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 3.5e-219 765.0 472 79.4
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.6e-219 764.6 472 78.0
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.9e-219 764.2 469 78.0
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.7e-218 762.7 474 78.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.5e-217 756.9 472 77.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 8.0e-216 753.8 467 77.9
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 8.0e-216 753.8 478 75.7
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.4e-215 753.1 467 76.4
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.4e-215 753.1 481 76.7
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.3e-215 752.3 477 76.5
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.1e-215 751.9 477 76.5
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.1e-215 751.9 459 79.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 5.8e-214 747.7 475 76.6
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.5e-214 747.3 475 74.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.3e-213 746.5 482 74.9
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 2.9e-213 745.3 484 75.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.3e-213 743.8 478 74.7
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-212 742.7 473 77.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.2e-212 741.9 482 73.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 3.2e-212 741.9 476 76.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.1e-212 741.5 472 75.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.7e-211 738.8 468 77.8
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 6.0e-211 737.6 475 74.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.0e-210 736.9 478 74.3
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.0e-210 736.9 473 74.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.0e-210 736.9 474 75.1
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.3e-210 735.7 474 75.9
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.0e-210 735.3 475 73.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.0e-210 735.3 468 75.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 7.3e-209 730.7 472 73.5
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.8e-208 728.8 477 75.1
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.8e-208 728.8 473 76.5
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.4e-206 721.8 472 74.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.4e-206 721.8 462 76.2
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 9.8e-206 720.3 470 71.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.6e-203 713.0 472 73.9
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.6e-203 713.0 470 73.0
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.1e-203 712.6 475 72.8
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 6.0e-203 711.1 451 76.7
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 7.8e-203 710.7 470 72.8
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.3e-202 709.9 468 73.1
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.1e-201 706.8 474 72.8
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.3e-201 705.3 466 73.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.6e-201 704.5 451 74.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 9.5e-201 703.7 466 72.7
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.1e-200 702.6 439 76.3
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.8e-200 702.2 466 72.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.1e-199 698.7 431 78.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.0e-198 696.0 538 65.4
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.6e-198 695.7 486 71.6
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.6e-198 695.7 426 78.4
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 2.6e-198 695.7 469 71.9
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 7.6e-198 694.1 478 71.5
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 6.4e-197 691.0 487 71.3
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.1e-196 690.3 478 71.3
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.1e-195 686.0 462 72.7
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.7e-195 685.6 466 73.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.0e-194 683.7 476 71.6
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.0e-194 683.7 479 71.6
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.6e-194 681.0 468 70.5
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 8.6e-194 680.6 470 72.1
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.5e-193 679.9 472 71.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.9e-193 679.5 468 72.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.3e-193 678.3 472 70.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 7.3e-193 677.6 478 70.9
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.2e-192 676.8 470 71.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 4.7e-192 674.9 472 71.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-191 673.7 471 71.5
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.1e-191 672.2 470 70.9
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 4.0e-191 671.8 466 72.7
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 4.0e-191 671.8 476 70.8
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 8.9e-191 670.6 476 71.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.0e-190 669.5 472 71.0
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.4e-190 668.3 413 75.8
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 9.9e-190 667.2 466 72.3
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.7e-189 666.4 471 70.7
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.7e-189 666.4 471 70.7
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-188 663.7 471 70.7
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 7.1e-188 661.0 471 70.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.3e-186 656.0 496 65.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 8.7e-186 654.1 426 74.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.3e-184 650.2 480 68.1
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.1e-184 649.4 513 63.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.3e-181 640.2 486 68.1
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.2e-181 639.4 472 69.5
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.2e-179 633.6 447 70.5
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.2e-179 633.6 534 62.2
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 3.0e-178 629.0 470 65.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.7e-178 627.9 471 65.4
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.1e-177 627.1 473 65.8
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.0e-174 616.3 415 71.3
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.0e-170 604.0 367 77.7
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.7e-165 586.6 474 66.5
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.9e-164 583.2 350 79.4
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.2e-164 582.0 467 65.5
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.2e-163 580.5 412 68.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.1e-163 579.7 477 61.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.8e-159 566.6 510 57.5
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 4.2e-156 555.4 488 60.9
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.6e-155 552.4 468 62.4
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-151 540.8 363 72.5
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.1e-145 520.8 468 59.0
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.4e-145 518.1 481 57.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.0e-134 483.4 474 53.2
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.0e-130 471.1 546 46.7
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.0e-125 454.5 470 52.8
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 3.4e-113 412.9 269 72.5
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-112 410.6 329 66.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.2e-107 394.4 305 63.0
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.0e-107 391.7 228 82.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.2e-94 351.3 478 45.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.5e-92 341.7 289 64.4
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.0e-85 320.1 259 61.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 5.6e-84 315.8 383 45.7
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.4e-81 306.6 268 59.7
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 7.8e-78 295.4 493 37.7
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.2e-71 273.5 248 59.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.0e-69 268.5 505 37.0
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.1e-67 260.8 487 37.2
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.1e-66 256.9 269 50.9
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.9e-64 250.4 463 37.8
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.9e-57 225.3 174 65.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.9e-56 223.0 303 45.5
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.9e-53 213.4 181 60.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 9.6e-52 208.8 209 51.7
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-49 201.8 111 81.1
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.2e-49 201.8 198 51.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-48 198.4 111 79.3
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.9e-48 197.2 111 80.2
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 3.5e-46 190.3 206 51.5
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.7e-40 171.4 111 71.2
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.2e-39 167.2 107 74.8
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.2e-39 167.2 120 64.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 3.6e-38 163.7 107 72.0
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-36 158.7 320 33.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.5e-33 148.3 122 59.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.1e-31 142.1 91 68.1
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.2e-31 140.6 104 62.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.9e-29 133.7 67 95.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 5.5e-23 113.2 123 54.5
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 3.9e-21 107.1 67 76.1
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.7e-16 91.7 58 72.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-14 85.5 98 52.0
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.5e-07 61.2 36 80.6
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 4.2e-07 60.5 45 64.4
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.6e-06 58.5 47 55.3
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 4.7e-06 57.0 41 70.7


User provided reference genes

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