Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.5e-235 819.3 470 100.0
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.1e-172 610.5 428 74.1
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 3.2e-161 572.4 422 70.4
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.1e-160 569.7 422 68.5
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 6.0e-160 568.2 422 71.3
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.0e-160 568.2 421 69.1
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.0e-159 567.4 421 70.5
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 5.1e-159 565.1 424 69.8
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.7e-159 564.7 420 70.2
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 6.7e-159 564.7 421 69.8
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.1e-158 563.9 434 68.7
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.5e-158 563.5 448 67.0
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.3e-158 562.4 448 67.0
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.3e-158 562.0 448 66.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.4e-156 557.0 455 66.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 2.4e-156 556.2 423 68.3
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 3.1e-156 555.8 430 68.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.1e-156 555.8 420 68.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 5.3e-156 555.1 432 67.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.6e-155 552.7 420 70.0
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.9e-154 549.3 433 68.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 2.9e-154 549.3 435 66.2
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.4e-153 547.0 422 69.0
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.4e-153 547.0 433 67.7
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.6e-152 542.0 404 70.0
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 4.6e-152 542.0 422 70.4
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 6.1e-152 541.6 420 68.3
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 3.9e-151 538.9 422 66.8
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 5.1e-151 538.5 421 68.6
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 6.7e-151 538.1 420 71.2
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.7e-150 535.0 414 66.4
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 5.7e-150 535.0 447 63.8
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 3.7e-149 532.3 422 67.3
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 6.9e-148 528.1 422 66.6
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 7.7e-147 524.6 435 64.4
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.0e-146 524.2 443 65.0
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.2e-146 523.1 443 63.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.9e-146 522.7 300 84.7
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.9e-146 522.7 428 65.4
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 5.0e-146 521.9 303 85.1
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.5e-146 521.5 425 67.1
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 8.5e-146 521.2 445 63.6
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 8.5e-146 521.2 442 63.3
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.9e-145 520.0 425 66.8
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 4.2e-145 518.8 376 70.7
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 7.2e-145 518.1 420 64.0
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 7.9e-144 514.6 420 64.8
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-143 514.2 442 64.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-143 512.7 468 59.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.1e-143 511.9 432 62.3
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-142 510.4 464 59.3
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.5e-142 510.4 438 62.8
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.3e-142 509.2 469 58.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.3e-141 507.3 448 60.7
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 2.8e-141 506.1 432 61.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.8e-141 506.1 425 62.1
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 3.7e-141 505.8 414 64.0
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.7e-141 505.8 421 64.6
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 3.7e-141 505.8 445 60.9
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 4.1e-140 502.3 423 63.1
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 4.1e-140 502.3 420 63.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 5.3e-140 501.9 419 61.3
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.0e-139 500.0 414 63.0
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.6e-139 499.6 426 63.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.2e-138 496.5 436 60.8
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.9e-138 496.1 303 79.5
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 8.5e-138 494.6 375 68.3
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 8.5e-138 494.6 418 67.5
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.1e-137 494.2 433 61.2
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.4e-137 493.8 384 67.2
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.5e-137 493.0 433 60.5
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.2e-137 492.7 429 61.8
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.6e-136 489.2 487 55.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 4.7e-136 488.8 434 60.4
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 8.0e-136 488.0 381 68.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 3.9e-135 485.7 422 63.0
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.1e-134 484.2 425 61.6
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.3e-134 482.6 421 61.5
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 4.4e-134 482.3 423 60.0
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.7e-134 481.9 431 59.9
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 7.4e-134 481.5 447 60.0
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 7.4e-134 481.5 303 76.6
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 9.7e-134 481.1 429 62.0
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 9.7e-134 481.1 447 60.0
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 9.7e-134 481.1 429 62.0
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 9.7e-134 481.1 437 60.0
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.7e-133 479.2 426 61.5
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 6.3e-133 478.4 389 62.0
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 8.2e-133 478.0 484 54.1
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.1e-132 477.6 465 59.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.4e-132 476.5 382 65.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 5.3e-132 475.3 389 64.5
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.2e-131 474.2 435 63.4
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.9e-131 471.9 401 64.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.7e-130 470.3 304 74.7
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.9e-130 469.5 305 74.8
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 3.2e-129 466.1 494 55.9
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 3.2e-129 466.1 403 62.5
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.2e-129 464.9 420 58.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.1e-128 463.4 427 59.0
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 5.2e-127 458.8 426 57.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 6.7e-127 458.4 375 65.9
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.3e-125 454.1 381 65.9
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.2e-125 453.4 432 57.6
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 4.8e-125 452.2 390 62.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-124 450.3 406 60.1
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 7.0e-124 448.4 446 54.7
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 4.5e-123 445.7 426 59.2
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.7e-122 443.7 406 59.4
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.9e-122 443.0 281 75.8
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.9e-121 440.3 399 57.6
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 4.2e-121 439.1 394 60.9
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 9.4e-121 438.0 397 57.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.7e-120 436.4 391 56.3
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 6.1e-120 435.3 397 57.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.0e-119 434.5 393 56.2
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.5e-118 430.6 303 66.0
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 4.8e-117 425.6 322 68.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.3e-114 417.5 385 56.4
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.7e-114 417.2 282 73.4
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 7.2e-113 411.8 461 52.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.1e-112 410.2 431 53.1
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.1e-112 410.2 311 64.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.0e-111 407.9 364 59.1
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 5.2e-111 405.6 420 55.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 8.9e-111 404.8 411 54.3
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 1.7e-109 400.6 301 63.8
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 6.3e-109 398.7 283 70.7
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 9.5e-105 384.8 249 77.5
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.7e-104 382.5 422 51.4
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.1e-104 382.1 360 56.9
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 4.0e-103 379.4 310 59.7
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.2e-102 377.9 423 51.3
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 7.3e-97 358.6 347 58.2
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.1e-95 353.2 264 68.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.3e-93 347.8 307 55.7
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.5e-91 339.7 311 55.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-89 334.0 375 49.3
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-88 330.9 375 48.8
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.8e-88 330.1 375 48.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.8e-87 327.4 301 55.5
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 5.8e-86 322.4 406 45.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 7.5e-86 322.0 406 45.8
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.2e-83 314.7 398 45.7
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-81 306.6 400 45.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.4e-79 301.2 353 47.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.8e-78 295.8 276 59.8
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.3e-77 294.7 353 46.7
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.4e-76 290.4 338 49.7
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.7e-74 284.3 180 77.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.4e-60 236.1 327 41.6
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.1e-59 234.2 154 79.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 4.6e-59 233.0 143 83.9
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.8e-54 216.1 153 67.3
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.1e-48 197.6 200 53.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 8.2e-48 195.7 125 73.6
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 5.0e-45 186.4 142 68.3
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.4e-36 158.3 94 76.6
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 3.6e-35 153.7 166 52.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.5e-30 136.7 133 56.4
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-27 127.5 119 55.5
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 9.7e-25 119.0 114 51.8
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.3e-24 118.6 84 69.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-24 118.2 98 55.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-22 111.7 94 55.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 4.5e-22 110.2 101 53.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-21 108.6 94 55.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 5.2e-18 96.7 202 34.2
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.1e-17 95.5 62 79.0
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.1e-17 95.5 148 42.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.8e-16 90.9 246 30.5
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 4.8e-16 90.1 96 55.2
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 2.2e-13 81.3 111 43.2
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 3.2e-12 77.4 153 33.3
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 8.0e-11 72.8 49 65.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.3e-10 71.2 54 51.9
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-10 71.2 54 51.9
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 1.5e-09 68.6 85 43.5
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 5.7e-09 66.6 188 31.4
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.7e-09 66.6 120 35.8
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 1.3e-08 65.5 84 46.4
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 1.7e-08 65.1 84 46.4
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.7e-08 65.1 39 79.5
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 2.2e-08 64.7 87 43.7
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.7e-06 57.8 46 63.0


User provided reference genes

Program Settings