Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.2e-196 687.6 356 100.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.5e-160 568.5 293 99.7
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.7e-122 443.4 291 81.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 9.7e-94 347.8 296 64.2
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 5.9e-91 338.6 297 60.9
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.2e-89 332.8 298 59.4
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.5e-89 332.0 292 67.1
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.4e-87 327.4 299 60.5
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 5.2e-87 325.5 295 58.6
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.0e-86 323.6 296 60.5
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 4.8e-85 318.9 297 57.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.4e-84 316.6 299 58.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.6e-83 313.9 296 57.1
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.7e-83 313.2 298 57.7
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 4.5e-83 312.4 300 59.3
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.8e-82 309.3 295 56.9
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.0e-82 308.9 302 57.9
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 5.0e-82 308.9 306 55.9
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.5e-82 308.5 295 56.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 8.5e-82 308.1 290 57.6
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.1e-81 307.8 292 58.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.1e-81 307.8 315 56.2
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.5e-81 305.4 292 55.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 6.1e-80 302.0 305 55.1
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.3e-79 300.1 297 55.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 5.2e-79 298.9 294 54.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.6e-78 296.6 296 56.1
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 7.5e-78 295.0 327 52.0
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.7e-77 293.9 289 57.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 8.3e-77 291.6 282 54.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-76 290.8 295 54.2
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.4e-76 290.8 297 55.6
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.1e-76 289.7 295 58.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 4.1e-76 289.3 273 57.5
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 9.2e-76 288.1 293 54.3
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.0e-75 287.0 296 54.1
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.0e-74 284.6 295 53.6
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.7e-74 283.9 295 53.6
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.9e-74 283.1 296 53.7
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 6.6e-74 282.0 297 53.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.1e-73 281.2 295 53.6
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.1e-73 281.2 292 55.1
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.3e-73 279.6 297 52.9
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 5.6e-73 278.9 300 52.3
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 7.3e-73 278.5 322 51.2
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 7.3e-73 278.5 292 54.5
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.6e-72 277.3 292 52.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.1e-72 276.9 300 54.3
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 4.7e-72 275.8 295 52.2
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 6.1e-72 275.4 298 54.4
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 8.0e-72 275.0 288 54.2
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.3e-71 273.5 291 53.6
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 6.8e-71 271.9 292 50.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.4e-70 269.6 298 53.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 4.4e-70 269.2 301 52.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 5.7e-70 268.9 315 50.8
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 7.5e-70 268.5 295 51.2
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 9.8e-70 268.1 299 51.2
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 2.2e-69 266.9 298 52.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.9e-69 266.5 296 53.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 2.9e-69 266.5 300 51.3
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.9e-69 265.8 292 52.7
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 8.3e-69 265.0 272 58.5
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.8e-68 263.8 294 53.1
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.8e-68 263.8 292 51.4
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.8e-68 263.8 296 49.0
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.8e-68 263.8 292 52.7
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 3.2e-68 263.1 297 53.2
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.4e-68 262.3 296 50.0
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.2e-67 261.2 295 50.5
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.6e-67 260.8 296 49.7
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.7e-67 260.0 300 50.3
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.7e-67 260.0 329 47.4
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.3e-66 257.7 296 49.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.7e-66 257.3 272 57.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.3e-66 256.9 296 47.6
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.0e-66 256.5 292 50.3
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 3.9e-66 256.1 299 48.5
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 6.6e-66 255.4 302 51.0
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 6.6e-66 255.4 289 52.2
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.9e-65 253.8 292 52.1
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 5.6e-65 252.3 300 50.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 7.3e-65 251.9 288 50.7
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.0e-62 243.8 311 48.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.6e-62 243.4 295 48.1
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 5.8e-62 242.3 273 49.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.1e-60 238.0 291 48.8
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.4e-60 237.7 286 50.3
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.9e-60 237.3 256 51.6
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.6e-59 234.2 290 46.2
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 2.7e-59 233.4 289 47.1
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.7e-59 233.4 292 50.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 4.6e-59 232.6 296 49.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 6.0e-59 232.3 274 47.8
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.1e-57 228.0 295 48.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.5e-57 227.6 314 45.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.6e-56 224.2 288 45.8
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 8.1e-56 221.9 289 44.3
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 8.1e-56 221.9 272 46.0
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.8e-55 220.7 289 44.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 3.1e-55 219.9 290 44.1
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 4.4e-54 216.1 301 46.2
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.2e-53 213.8 292 44.5
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.4e-52 210.3 290 43.1
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 4.1e-52 209.5 296 41.9
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.3e-50 204.5 211 55.0
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 5.1e-50 202.6 213 54.9
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 8.6e-50 201.8 283 45.9
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.3e-49 199.9 336 40.8
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 6.6e-42 175.6 296 41.2
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.6e-40 171.0 211 45.5
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 9.9e-38 161.8 250 39.2
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 9.9e-38 161.8 250 39.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 2.2e-37 160.6 287 38.7
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.9e-37 159.5 297 39.7
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 9.0e-31 138.7 235 41.3
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.5e-30 137.9 323 35.9
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 7.9e-27 125.6 171 38.6
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 3.6e-24 116.7 209 38.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.3e-21 108.2 165 47.3
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-19 101.7 166 46.4
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.2e-14 85.1 147 31.3
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.2e-14 85.1 70 60.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 6.7e-10 69.3 179 34.1
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 2.1e-08 64.3 37 78.4
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.1e-07 62.0 248 26.6


User provided reference genes

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