Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-181 639.8 336 100.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.8e-135 485.0 426 66.9
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.0e-118 427.9 319 76.8
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.3e-89 333.2 292 67.1
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.0e-56 223.8 409 42.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.6e-56 223.4 446 39.5
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.9e-54 217.2 412 41.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.9e-52 209.5 430 37.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.6e-50 204.1 432 37.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.1e-50 203.8 451 38.1
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 6.2e-50 202.2 444 39.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.1e-49 199.9 441 38.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 4.0e-49 199.5 448 36.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 5.3e-49 199.1 429 38.7
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.3e-49 199.1 435 37.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.2e-48 198.0 421 36.6
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.2e-48 198.0 440 38.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 2.2e-47 193.7 454 37.7
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.5e-46 189.1 379 39.6
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.6e-45 187.6 451 35.7
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.7e-45 186.8 379 39.3
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.8e-44 184.1 425 38.6
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.3e-44 183.7 432 35.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.9e-44 183.0 437 35.7
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 5.1e-44 182.6 343 42.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.7e-44 182.2 437 35.7
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.5e-43 180.3 421 36.3
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.3e-43 179.9 300 42.7
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 3.7e-42 176.4 432 35.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.1e-41 174.9 333 40.2
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 4.0e-41 172.9 400 36.5
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 6.9e-41 172.2 415 37.1
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-40 171.4 438 34.9
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.2e-40 171.4 478 34.1
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 7.6e-40 168.7 440 35.7
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.0e-39 168.3 434 34.3
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.3e-39 167.9 436 34.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.7e-39 167.5 437 34.8
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.2e-39 167.2 381 37.8
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 3.8e-39 166.4 401 36.4
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 6.5e-39 165.6 403 38.0
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 5.5e-38 162.5 431 35.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 7.1e-38 162.2 396 34.8
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.2e-37 161.4 422 33.4
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.5e-37 159.8 389 35.5
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 3.5e-37 159.8 389 36.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 6.1e-37 159.1 389 36.2
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.0e-36 158.3 447 33.1
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.8e-36 157.5 432 33.8
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.8e-36 157.5 410 35.4
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.3e-36 157.1 334 38.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 2.3e-36 157.1 404 34.9
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.0e-36 156.8 432 34.7
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 3.9e-36 156.4 438 34.0
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 6.7e-36 155.6 405 34.3
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.5e-35 153.7 389 34.7
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.3e-35 153.3 428 32.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 9.7e-35 151.8 436 32.3
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.6e-34 151.0 401 35.2
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.8e-34 150.2 390 35.4
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.8e-34 150.2 400 32.2
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 4.8e-34 149.4 401 34.9
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 8.2e-34 148.7 329 40.1
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.8e-33 147.5 400 34.8
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 3.1e-33 146.7 427 33.0
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 5.3e-33 146.0 428 31.5
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 9.0e-33 145.2 387 34.1
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.5e-32 144.4 444 32.2
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.5e-32 144.4 404 34.7
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 4.5e-32 142.9 427 33.7
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 5.9e-32 142.5 343 35.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.7e-31 141.0 443 32.1
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.2e-31 140.6 433 32.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 3.8e-31 139.8 437 32.5
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 3.8e-31 139.8 432 32.2
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.5e-31 139.0 380 36.3
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.4e-30 137.9 286 41.3
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 3.2e-30 136.7 380 36.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 5.5e-30 136.0 436 33.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 7.2e-30 135.6 391 31.7
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 7.2e-30 135.6 369 34.7
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.1e-29 134.0 434 32.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.6e-29 132.9 387 31.3
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.4e-28 131.3 434 33.2
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 8.8e-28 128.6 376 31.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.1e-27 128.3 346 35.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 2.5e-27 127.1 421 31.4
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.3e-27 126.7 435 31.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 4.3e-27 126.3 434 30.0
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.8e-26 123.6 403 32.0
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.8e-26 123.6 430 30.2
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.3e-26 122.5 282 35.8
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 6.3e-26 122.5 438 31.1
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.4e-25 121.3 427 30.2
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 3.1e-25 120.2 397 30.5
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 6.9e-25 119.0 416 29.8
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 6.9e-25 119.0 416 29.8
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 9.1e-25 118.6 428 29.2
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.0e-24 117.5 467 30.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.4e-24 116.7 277 35.0
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 5.9e-24 115.9 291 33.0
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.2e-23 114.0 426 30.0
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.9e-23 113.6 375 30.9
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 9.4e-22 108.6 274 32.5
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.1e-21 107.5 370 30.5
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 7.9e-21 105.5 419 28.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.4e-20 104.8 378 30.2
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.5e-19 101.3 381 27.6
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 4.4e-19 99.8 335 31.3
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.7e-18 96.7 251 35.9
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 8.2e-18 95.5 250 33.6
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 4.1e-17 93.2 213 34.7
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 3.8e-15 86.7 142 37.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.8e-15 86.7 290 35.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.6e-13 81.3 291 35.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 3.6e-13 80.1 300 29.0
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.0e-12 77.0 67 56.7
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.5e-11 74.7 310 27.1
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 9.7e-11 72.0 323 27.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 9.7e-11 72.0 323 27.6
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 9.7e-11 72.0 160 28.8
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.7e-10 71.2 264 25.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.5e-06 58.2 191 31.4


User provided reference genes

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