Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.9e-272 939.9 486 100.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.8e-199 699.5 473 79.7
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-122 444.1 291 81.8
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.0e-117 427.9 319 76.8
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 9.2e-103 378.3 498 49.2
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.0e-101 374.8 494 48.6
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 4.3e-100 369.4 488 49.4
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.6e-100 369.0 499 49.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.6e-99 367.5 496 49.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.6e-99 366.3 470 49.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 4.7e-99 365.9 483 47.6
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 2.3e-98 363.6 456 49.3
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 7.5e-97 358.6 474 49.4
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 6.4e-96 355.5 504 48.8
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.5e-92 343.6 542 44.3
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.8e-91 340.1 483 47.0
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 4.7e-91 339.3 480 46.7
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 6.2e-91 339.0 471 48.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.9e-88 330.1 522 44.1
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.9e-88 330.1 476 46.8
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.7e-88 329.7 481 44.9
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.7e-88 329.7 504 46.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.4e-88 328.9 480 46.9
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 8.3e-88 328.6 446 48.2
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.4e-87 327.8 480 45.8
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-87 327.0 466 46.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.2e-87 326.6 486 45.1
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 4.1e-87 326.2 466 47.6
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.2e-86 324.7 484 44.8
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.3e-85 321.2 475 45.7
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.3e-85 321.2 466 45.7
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.3e-85 320.5 490 44.7
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 5.1e-85 319.3 483 46.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 8.6e-85 318.5 489 44.8
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 8.6e-85 318.5 480 44.8
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.3e-84 316.6 463 47.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 5.6e-84 315.8 477 44.9
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.6e-84 315.8 470 45.1
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.1e-83 313.9 470 44.9
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.1e-82 311.6 478 45.6
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.8e-82 310.8 500 45.6
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 2.4e-82 310.5 476 45.2
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 8.9e-82 308.5 500 42.2
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.5e-81 307.8 406 50.7
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.4e-81 306.6 484 44.2
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.4e-81 306.6 507 45.4
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.9e-80 303.5 484 43.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 4.9e-80 302.8 500 41.6
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 6.4e-80 302.4 481 44.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.4e-79 301.2 473 42.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.9e-79 300.8 470 44.9
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.9e-79 300.8 467 43.3
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.4e-79 300.4 481 43.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.4e-79 300.4 471 41.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.1e-79 298.9 390 47.4
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.2e-78 298.1 465 44.3
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.6e-78 297.7 465 44.3
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.6e-78 297.7 469 44.1
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 4.6e-78 296.2 510 40.6
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 6.0e-78 295.8 482 43.6
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.3e-77 294.7 491 44.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.9e-77 293.1 466 46.4
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 3.9e-77 293.1 477 44.2
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 6.6e-77 292.4 453 44.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 8.7e-77 292.0 479 41.1
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.3e-76 288.9 465 42.8
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.6e-75 287.7 483 44.5
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.1e-75 287.3 482 42.9
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.8e-75 287.0 490 43.1
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.0e-73 280.8 489 40.7
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 5.8e-73 279.3 471 42.5
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.8e-72 276.6 465 43.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.4e-71 274.6 526 39.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 4.2e-71 273.1 464 42.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.6e-70 271.2 474 42.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.7e-70 270.4 489 41.9
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.0e-69 268.5 362 50.8
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 6.6e-69 265.8 476 40.3
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.5e-68 263.8 488 40.4
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 5.6e-68 262.7 484 41.3
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 6.2e-67 259.2 455 42.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.4e-66 257.3 465 42.2
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 4.0e-66 256.5 490 40.4
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.0e-66 256.5 482 39.2
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.4e-65 253.4 313 49.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 7.6e-65 252.3 483 38.9
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.9e-64 249.6 481 37.6
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 4.2e-63 246.5 474 38.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.9e-62 242.3 426 43.2
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.3e-60 236.5 468 37.2
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 7.4e-60 235.7 474 37.6
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.8e-59 233.8 479 38.0
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 3.7e-59 233.4 495 37.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.8e-59 233.0 489 37.2
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.8e-58 231.1 477 36.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.1e-58 230.3 527 36.1
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 9.9e-57 225.3 459 37.3
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.9e-56 223.8 476 37.4
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.8e-56 223.4 479 38.2
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 4.9e-56 223.0 468 37.0
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 6.4e-56 222.6 505 37.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 6.4e-56 222.6 468 37.0
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.2e-54 218.4 373 42.9
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 5.1e-53 213.0 474 36.3
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 4.3e-52 209.9 466 35.6
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.7e-48 198.0 468 36.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.2e-48 197.6 494 34.8
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 5.5e-47 193.0 432 35.9
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 5.5e-47 193.0 432 35.9
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.8e-45 188.0 509 33.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.3e-45 187.6 285 43.2
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 6.7e-45 186.0 326 37.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 6.9e-42 176.0 370 41.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-39 168.3 371 41.2
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.9e-39 167.9 396 35.9
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.5e-39 167.5 489 35.2
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.9e-31 141.4 263 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.1e-26 123.6 499 29.7
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.0e-21 109.0 485 28.5
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.8e-21 108.2 440 27.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.8e-19 100.1 229 35.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 2.9e-16 90.9 160 33.1
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.3e-13 81.3 210 36.2
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 4.4e-12 77.0 225 32.4
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 7.5e-12 76.3 206 35.0
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.7e-11 73.9 67 55.2
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 99 45.5
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 182 34.6
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 99 45.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 99 45.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 99 45.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 99 45.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.7e-08 65.1 99 45.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 6.5e-08 63.2 95 43.2
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.5e-07 62.0 201 30.8
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 6.1e-06 56.6 100 42.0


User provided reference genes

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