Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 6.3e-238 827.0 413 100.0
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 5.3e-192 674.5 409 79.5
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.1e-189 666.8 407 79.6
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.6e-188 662.9 407 78.1
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 6.0e-188 661.0 410 77.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 7.9e-188 660.6 406 77.6
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 3.0e-187 658.7 411 77.6
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 5.1e-187 657.9 404 77.5
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.7e-187 657.5 415 76.4
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.5e-186 656.4 414 76.8
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 5.6e-186 654.4 410 76.6
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 9.6e-186 653.7 410 77.8
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.3e-185 653.3 410 74.9
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.3e-185 653.3 405 77.5
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 1.3e-185 653.3 405 77.5
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.1e-185 652.5 404 77.0
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 2.8e-185 652.1 411 78.6
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 3.1e-184 648.7 404 77.0
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 5.3e-184 647.9 403 77.9
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.5e-183 646.4 402 77.4
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.5e-183 646.4 415 75.7
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 2.0e-183 646.0 407 76.2
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 2.6e-183 645.6 407 75.2
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 2.6e-183 645.6 434 72.6
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 3.4e-183 645.2 409 77.0
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 4.5e-183 644.8 408 77.0
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 4.5e-183 644.8 402 77.9
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.5e-183 644.8 419 75.9
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 4.5e-183 644.8 407 75.2
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 7.6e-183 644.0 408 76.7
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.7e-182 642.9 401 76.6
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.7e-182 642.9 407 75.9
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 2.2e-182 642.5 452 71.2
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 2.9e-182 642.1 403 75.9
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.4e-181 639.8 409 76.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.4e-181 639.8 409 76.0
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.4e-181 639.8 406 75.4
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.9e-181 639.4 429 73.9
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 1.9e-181 639.4 411 74.9
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 4.2e-181 638.3 409 76.5
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 5.5e-181 637.9 407 74.0
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 1.6e-180 636.3 410 75.1
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 2.1e-180 636.0 407 74.9
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.1e-180 636.0 445 70.1
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 3.5e-180 635.2 410 75.6
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 4.6e-180 634.8 410 74.9
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.0e-180 634.4 408 75.2
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 6.0e-180 634.4 406 73.6
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 6.0e-180 634.4 412 75.2
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 1.3e-179 633.3 406 75.1
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.8e-179 632.9 407 73.7
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.3e-179 632.5 407 74.0
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 5.1e-179 631.3 414 73.9
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 5.1e-179 631.3 415 73.5
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 6.7e-179 630.9 406 75.1
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.9e-178 629.4 407 73.5
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 3.3e-178 628.6 404 75.5
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 4.3e-178 628.2 400 74.5
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 5.7e-178 627.9 405 74.6
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.7e-178 627.9 408 74.8
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 5.7e-178 627.9 410 72.9
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 7.4e-178 627.5 406 74.9
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 2.1e-177 625.9 410 72.7
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 4.8e-177 624.8 408 74.3
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 8.2e-177 624.0 408 74.3
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.1e-176 623.6 426 72.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.1e-176 623.6 414 72.7
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.8e-176 622.9 400 74.8
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.4e-176 622.5 402 75.1
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 2.4e-176 622.5 402 75.1
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.4e-176 622.5 402 75.1
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 3.1e-176 622.1 394 75.4
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 4.1e-176 621.7 399 74.9
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 5.3e-176 621.3 399 74.9
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 6.9e-176 620.9 399 74.9
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 1.5e-175 619.8 414 74.2
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 2.0e-175 619.4 409 72.1
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 3.4e-175 618.6 397 75.1
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 3.4e-175 618.6 406 73.9
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.0e-174 617.1 402 73.4
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 2.2e-174 615.9 431 69.8
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 2.9e-174 615.5 403 74.4
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 3.8e-174 615.1 406 74.1
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.1e-173 613.6 410 72.2
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 5.5e-173 611.3 405 72.1
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.6e-172 608.2 458 66.6
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 1.0e-171 607.1 397 74.1
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 2.3e-171 605.9 402 71.9
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 3.9e-171 605.1 388 74.7
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 3.9e-171 605.1 401 73.3
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 8.7e-171 604.0 402 71.6
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 1.3e-169 600.1 410 72.4
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.8e-169 598.2 403 73.4
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 6.3e-169 597.8 406 71.4
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 1.8e-168 596.3 437 67.3
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 6.9e-168 594.3 368 76.4
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.2e-167 593.6 415 70.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.0e-167 592.8 402 69.7
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 2.6e-167 592.4 491 61.9
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 5.9e-167 591.3 406 71.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 3.2e-165 585.5 439 68.3
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 5.5e-165 584.7 403 70.7
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.1e-164 582.8 410 70.2
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.0e-163 580.5 410 68.5
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 2.3e-163 579.3 401 70.1
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 4.3e-162 575.1 427 65.8
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.0e-158 563.9 387 69.5
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 5.0e-158 561.6 411 67.9
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 4.2e-157 558.5 350 76.0
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 2.1e-156 556.2 350 76.9
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 3.9e-155 552.0 359 72.1
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 2.8e-153 545.8 407 67.1
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.0e-150 537.3 360 70.8
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.5e-149 531.6 415 66.7
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 9.7e-146 520.8 412 65.8
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 1.3e-145 520.4 409 61.6
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 2.8e-145 519.2 419 60.4
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 9.4e-141 504.2 385 66.2
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.2e-140 503.8 410 64.1
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.6e-138 496.1 400 60.2
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.4e-138 495.7 312 76.6
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 6.5e-134 481.5 399 60.2
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.5e-125 453.0 394 58.4
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 3.0e-123 446.0 366 62.3
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.0e-115 421.0 370 60.5
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 2.3e-110 403.3 413 50.6
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.2e-106 391.0 253 72.7
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 4.9e-105 385.6 413 49.9
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 1.6e-100 370.5 276 68.5
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 4.6e-95 352.4 255 69.4
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 7.8e-95 351.7 441 45.8
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 1.7e-94 350.5 210 78.6
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 5.1e-94 349.0 242 71.5
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.2e-92 344.4 202 80.2
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 6.2e-92 342.0 409 46.9
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-91 341.3 209 78.0
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.1e-78 295.8 410 43.7
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 9.6e-77 291.6 454 39.2
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.3e-69 266.2 290 51.4
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 8.1e-68 261.9 429 40.3
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.8e-65 253.1 365 41.4
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 4.2e-64 249.6 158 73.4
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.9e-61 240.7 178 69.1
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 2.5e-61 240.4 153 73.9
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 3.1e-59 233.4 188 65.4
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.9e-56 224.2 253 50.2
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 6.1e-55 219.2 194 61.9
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.9e-53 214.2 224 55.4
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.7e-53 212.6 338 40.5
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 3.2e-48 196.8 131 71.8
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.0e-46 190.3 123 70.7
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 7.0e-35 152.5 154 50.6
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.2e-34 151.8 280 34.6
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 6.3e-28 129.4 85 71.8
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 4.5e-26 123.2 81 74.1
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.3e-25 121.7 81 74.1
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.4e-22 111.7 107 50.5
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-22 111.3 303 28.1
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 3.4e-21 107.1 66 71.2
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 5.7e-21 106.3 55 87.3
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 1.3e-20 105.1 65 76.9
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.7e-12 78.2 56 67.9
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-12 78.2 43 76.7
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 2.2e-12 77.8 47 74.5
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 3.5e-10 70.5 293 27.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 4.5e-10 70.1 296 27.0
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 5.0e-09 66.6 239 23.8
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 2.5e-08 64.3 47 57.4
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 2.5e-08 64.3 224 29.5
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 9.5e-08 62.4 201 26.4
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 1.6e-07 61.6 194 27.3
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.6e-07 61.6 310 24.5
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.1e-07 61.2 310 25.5
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 2.8e-07 60.8 49 71.4
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 3.6e-07 60.5 294 25.5
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 8.0e-07 59.3 53 54.7
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.0e-06 58.9 42 64.3
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.8e-06 58.2 297 24.2
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 2.3e-06 57.8 191 29.8
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.0e-06 57.4 292 22.9
ECA248G0502 Erigeron canadensis HOM05D000783 ORTHO05D000705 3.0e-06 57.4 195 27.2
ClCG07G012970 Citrullus lanatus HOM05D004627 ORTHO05D005745 4.0e-06 57.0 77 41.6
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 4.0e-06 57.0 229 27.5
MELO3C012953.2 Cucumis melo HOM05D004627 ORTHO05D005745 5.2e-06 56.6 77 41.6
CsaV3_3G026250 Cucumis sativus L. HOM05D004627 ORTHO05D005745 5.2e-06 56.6 77 41.6
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.9e-06 55.8 293 23.2


User provided reference genes

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