Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 0.0e+00 1101.7 576 100.0
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 1.5e-269 932.6 573 83.8
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 1.5e-266 922.5 530 83.8
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 2.0e-266 922.2 576 79.9
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 4.5e-266 921.0 575 78.1
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 5.9e-266 920.6 573 78.2
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.3e-265 919.5 575 77.9
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.3e-265 919.5 576 79.2
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.2e-265 918.7 573 78.0
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 6.5e-265 917.1 573 78.0
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 8.5e-265 916.8 573 78.4
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 3.2e-264 914.8 578 77.2
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 4.2e-264 914.4 574 78.4
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 9.4e-264 913.3 573 79.6
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.2e-263 912.9 573 77.5
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 2.7e-263 911.8 573 77.5
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 4.7e-263 911.0 578 76.5
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 6.7e-262 907.1 573 76.8
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 7.4e-261 903.7 573 77.3
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.7e-260 902.5 577 77.3
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.7e-260 901.4 573 76.6
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.1e-259 899.8 577 76.3
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 1.8e-259 899.0 571 76.7
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 2.4e-259 898.7 601 74.4
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 4.1e-259 897.9 573 76.6
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 4.1e-259 897.9 576 76.2
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 4.1e-259 897.9 573 76.4
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 7.0e-259 897.1 581 75.9
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 1.2e-258 896.3 573 78.7
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.3e-257 892.9 573 76.1
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 2.9e-257 891.7 528 81.6
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 2.9e-257 891.7 574 77.2
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 2.5e-256 888.6 573 78.7
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 7.2e-256 887.1 570 76.5
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 9.4e-256 886.7 573 75.9
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.7e-255 885.2 574 75.1
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 8.0e-255 883.6 570 75.8
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 1.4e-254 882.9 573 75.9
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 4.0e-254 881.3 528 80.5
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 4.0e-254 881.3 573 78.0
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 6.7e-254 880.6 569 75.4
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 2.6e-253 878.6 574 75.6
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 7.5e-253 877.1 574 74.9
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 6.3e-252 874.0 574 73.7
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 8.2e-252 873.6 573 75.0
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.4e-251 872.8 573 74.7
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 3.1e-251 871.7 625 71.8
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 4.1e-251 871.3 574 75.4
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 5.3e-251 870.9 573 74.0
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.7e-250 868.6 570 74.9
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 3.5e-250 868.2 511 81.6
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 5.9e-250 867.5 573 74.0
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.7e-249 865.9 528 79.7
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 2.5e-248 862.1 580 74.0
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 1.6e-247 859.4 574 73.2
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 2.7e-247 858.6 570 72.3
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 2.7e-247 858.6 570 72.1
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 3.6e-247 858.2 574 72.8
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 6.1e-247 857.4 575 72.5
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 6.1e-247 857.4 573 72.9
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 8.0e-247 857.1 570 72.3
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.4e-246 856.3 564 75.2
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 1.4e-246 856.3 574 72.8
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.8e-246 855.9 570 72.5
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 3.0e-246 855.1 531 75.9
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.0e-246 855.1 574 74.2
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 4.0e-246 854.7 570 73.0
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 4.0e-246 854.7 570 72.1
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 6.8e-246 854.0 570 72.1
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 6.8e-246 854.0 570 71.9
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 6.8e-246 854.0 570 71.9
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 8.8e-246 853.6 530 77.7
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 2.6e-245 852.0 577 72.4
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 5.7e-245 850.9 570 72.8
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 5.7e-245 850.9 570 72.8
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 7.5e-245 850.5 565 72.0
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 7.5e-245 850.5 575 72.5
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 3.7e-244 848.2 573 71.6
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 8.3e-244 847.0 572 71.7
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.4e-243 846.3 526 76.4
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.4e-243 846.3 531 75.3
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 1.4e-243 846.3 532 79.1
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 7.0e-243 844.0 591 69.9
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 9.1e-243 843.6 511 78.3
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 9.1e-243 843.6 528 76.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 9.1e-243 843.6 528 76.7
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 8.0e-239 830.5 592 70.1
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 4.0e-238 828.2 530 75.1
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.5e-237 826.2 577 70.4
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 9.2e-235 817.0 577 68.6
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 4.5e-234 814.7 531 73.3
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 5.6e-232 807.7 658 67.5
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 3.6e-231 805.1 570 71.4
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 5.8e-229 797.7 530 72.3
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 1.3e-228 796.6 531 71.8
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 1.7e-228 796.2 529 71.5
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 6.4e-228 794.3 529 72.8
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.4e-227 793.1 564 70.2
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 7.0e-219 764.2 507 75.7
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 6.2e-215 751.1 446 80.9
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 2.1e-207 726.1 576 63.2
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 4.0e-206 721.8 576 65.3
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.2e-199 700.3 437 76.2
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.1e-199 699.5 406 80.8
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 1.7e-196 689.9 432 77.3
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 9.6e-192 674.1 439 74.7
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 5.5e-179 631.7 437 73.0
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 6.0e-178 628.2 441 73.5
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 5.1e-177 625.2 433 73.0
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 4.3e-176 622.1 538 58.0
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 2.1e-162 576.6 441 68.7
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.2e-146 524.2 545 51.0
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 2.6e-144 516.5 505 53.3
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 1.7e-143 513.8 376 72.1
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 7.7e-141 505.0 534 51.3
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 1.6e-117 427.6 340 65.3
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 4.7e-114 416.0 580 41.7
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-94 350.5 220 71.4
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 3.9e-92 343.2 213 82.2
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 7.3e-91 339.0 385 50.6
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 9.3e-86 322.0 280 63.2
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.1e-85 320.9 232 64.2
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 4.8e-82 309.7 585 37.9
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 4.6e-69 266.5 545 33.6
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 4.8e-66 256.5 537 34.1
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.5e-56 223.4 148 75.7
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 5.0e-55 219.9 151 72.2
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 7.9e-53 212.6 511 33.9
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.0e-52 212.2 139 76.3
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.5e-48 198.4 126 71.4
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.4e-44 185.3 95 81.1
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 5.9e-40 169.9 182 57.7
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.7e-39 168.3 106 79.2
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 6.5e-23 113.2 94 64.9
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.0e-20 105.9 71 66.2
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 4.5e-16 90.5 50 78.0
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 5.9e-16 90.1 63 61.9
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 4.2e-14 84.0 49 79.6
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.5e-11 75.5 59 71.2
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 8.6e-07 59.7 382 26.4
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 4.3e-06 57.4 301 26.6


User provided reference genes

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