Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 0.0e+00 1192.2 685 100.0
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 2.8e-49 201.1 101 99.0
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 4.0e-19 100.9 400 29.5
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 2.9e-17 94.7 366 31.1
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 1.4e-16 92.4 215 36.7
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 4.1e-16 90.9 405 27.2
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 2.0e-15 88.6 391 29.7
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.0e-14 86.3 372 28.2
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 3.0e-14 84.7 292 29.8
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 6.6e-14 83.6 367 28.1
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 6.6e-14 83.6 278 29.9
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 1.1e-13 82.8 403 28.8
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 7.3e-13 80.1 265 32.5
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 2.1e-12 78.6 240 30.4
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 6.2e-12 77.0 103 44.7
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 8.1e-12 76.6 231 29.4
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.4e-11 75.9 303 27.7
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 1.8e-11 75.5 324 29.0
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 3.1e-11 74.7 375 29.3
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 5.2e-11 73.9 101 41.6
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 8.9e-11 73.2 307 29.3
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 2.0e-10 72.0 99 43.4
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 2.0e-10 72.0 273 28.6
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 2.0e-10 72.0 381 25.5
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 2.6e-10 71.6 298 28.9
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 5.8e-10 70.5 103 40.8
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 7.5e-10 70.1 103 41.7
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 9.8e-10 69.7 341 28.4
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 9.8e-10 69.7 309 29.8
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.3e-09 69.3 267 28.8
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.7e-09 68.9 219 30.6
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 2.9e-09 68.2 311 29.3
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 8.3e-09 66.6 208 27.4
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 8.3e-09 66.6 224 31.2
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.9e-08 65.5 257 28.8
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 2.4e-08 65.1 282 29.1
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 3.2e-08 64.7 299 28.8
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 3.2e-08 64.7 232 27.6
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 3.2e-08 64.7 99 37.4
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 4.1e-08 64.3 101 39.6
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.4e-08 63.9 273 26.7
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 5.4e-08 63.9 101 38.6
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 7.1e-08 63.5 161 31.7
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 7.1e-08 63.5 161 31.7
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 9.2e-08 63.2 171 29.8
Lj8C151T6 Lonicera japonica HOM05D008023 ORTHO05D010897 1.6e-07 62.4 273 25.3
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 2.1e-07 62.0 248 27.0
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 2.7e-07 61.6 162 29.0
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 4.6e-07 60.8 243 26.3
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 6.0e-07 60.5 106 37.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 7.8e-07 60.1 783 21.6
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 7.8e-07 60.1 235 26.0
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.0e-06 59.7 111 34.2
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 1.0e-06 59.7 114 34.2
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.3e-06 59.3 210 28.1
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 1.3e-06 59.3 91 41.8
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 1.3e-06 59.3 83 43.4
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 1.7e-06 58.9 90 43.3
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 1.7e-06 58.9 90 43.3
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 1.7e-06 58.9 114 32.5
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.0e-06 58.2 240 27.5
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 3.0e-06 58.2 136 29.4
DCAR_013145 Daucus carota HOM05D008023 ORTHO05D002944 3.9e-06 57.8 112 36.6
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 3.9e-06 57.8 103 34.0
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 3.9e-06 57.8 320 25.9
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 5.1e-06 57.4 151 27.2
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 6.6e-06 57.0 230 27.8
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 6.6e-06 57.0 89 40.4
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 6.6e-06 57.0 89 40.4
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 8.6e-06 56.6 91 38.5


User provided reference genes

Program Settings