Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 6.5e-295 1016.5 472 100.0
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 6.1e-285 983.4 472 96.6
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 5.7e-243 844.0 451 84.9
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 6.3e-242 840.5 445 85.4
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.4e-241 839.3 445 84.9
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.4e-241 839.3 446 85.4
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 5.4e-241 837.4 439 85.9
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 7.0e-241 837.0 431 87.0
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 9.5e-238 826.6 448 83.9
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.6e-237 825.9 455 82.2
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 2.8e-237 825.1 432 86.1
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.4e-236 822.8 431 86.1
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.4e-236 822.8 471 80.3
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 2.3e-236 822.0 462 80.3
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.3e-236 822.0 469 81.0
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 2.3e-236 822.0 455 81.8
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 4.0e-236 821.2 429 86.2
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 4.0e-236 821.2 455 81.5
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.2e-235 819.7 447 83.0
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 2.6e-235 818.5 463 80.8
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 7.5e-235 817.0 445 83.1
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.3e-234 816.2 445 82.9
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.7e-234 815.8 469 80.4
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 2.2e-234 815.5 456 80.7
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 4.9e-234 814.3 444 82.9
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 6.4e-234 813.9 482 77.6
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 8.3e-234 813.5 469 80.0
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 8.3e-234 813.5 433 84.1
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.1e-233 813.1 448 82.6
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.1e-233 813.1 443 82.4
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 2.4e-233 812.0 444 82.7
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 3.2e-233 811.6 450 81.1
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.1e-233 811.2 457 80.3
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 5.4e-233 810.8 446 83.2
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 9.2e-233 810.1 445 83.1
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.2e-232 809.7 469 79.5
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 1.2e-232 809.7 435 83.2
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 1.6e-232 809.3 439 84.3
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 7.8e-232 807.0 432 83.1
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.0e-231 806.6 431 83.3
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 1.0e-231 806.6 456 79.4
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 3.9e-231 804.7 448 81.2
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 3.9e-231 804.7 436 83.0
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 6.6e-231 803.9 436 83.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 6.6e-231 803.9 436 83.3
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 6.6e-231 803.9 454 81.5
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 4.3e-230 801.2 429 83.9
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.3e-230 801.2 457 79.6
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 5.6e-230 800.8 491 75.8
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 5.6e-230 800.8 491 75.8
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 3.6e-229 798.1 428 83.2
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.7e-229 797.7 439 82.2
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.4e-228 796.2 431 82.8
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 1.4e-228 796.2 428 84.3
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.4e-228 796.2 443 81.0
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.8e-228 795.8 451 79.8
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 2.3e-228 795.4 439 82.5
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 2.3e-228 795.4 428 82.7
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 2.3e-228 795.4 428 83.6
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 5.2e-228 794.3 443 81.7
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.8e-228 793.9 441 80.7
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 8.9e-228 793.5 436 81.7
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 3.4e-227 791.6 437 81.9
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 9.8e-227 790.0 430 83.0
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.3e-226 789.6 448 79.5
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 2.2e-226 788.9 430 81.6
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.2e-226 788.9 430 83.0
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 2.2e-226 788.9 438 81.3
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 2.2e-226 788.9 438 81.3
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 4.9e-226 787.7 430 82.3
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 6.4e-226 787.3 438 81.7
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 3.2e-225 785.0 430 83.0
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.2e-225 785.0 434 80.0
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 4.1e-225 784.6 437 81.5
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 4.1e-225 784.6 436 81.2
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 5.4e-225 784.3 436 81.2
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 7.0e-225 783.9 444 80.9
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 9.2e-225 783.5 436 80.7
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 9.2e-225 783.5 437 81.2
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.7e-224 781.9 486 74.7
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.7e-224 781.9 453 78.8
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.3e-222 775.0 471 77.1
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 1.1e-220 770.0 459 76.5
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.0e-219 765.8 437 78.3
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 3.2e-217 758.4 439 78.6
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 5.1e-215 751.1 446 77.1
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.1e-213 745.7 438 76.0
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 3.4e-211 738.4 486 71.6
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 2.7e-208 728.8 444 74.8
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 9.6e-206 720.3 378 86.5
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 3.4e-203 711.8 430 76.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 3.4e-203 711.8 378 83.9
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 6.4e-202 707.6 430 73.7
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 3.5e-200 701.8 435 74.0
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 7.6e-195 684.1 452 69.9
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 9.9e-195 683.7 397 77.3
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 4.3e-190 668.3 453 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 2.8e-189 665.6 430 70.0
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.1e-185 653.7 421 73.6
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.2e-184 650.2 444 70.0
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 4.9e-178 628.2 431 67.5
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.3e-170 603.6 335 81.2
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.0e-167 592.4 299 88.6
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.4e-161 573.5 308 82.8
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 4.2e-161 572.0 451 61.2
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.4e-159 567.0 391 70.1
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 8.2e-157 557.8 464 58.8
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 2.9e-154 549.3 294 84.0
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 2.1e-136 490.0 281 79.4
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 6.2e-80 302.4 196 74.5
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.7e-72 276.6 167 74.3
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 8.1e-72 275.4 180 69.4
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 2.1e-67 260.8 417 42.0
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.8e-66 257.7 132 84.8
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.8e-66 257.7 133 86.5
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 2.5e-65 253.8 231 54.5
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 1.3e-61 241.5 141 78.0
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.9e-61 240.4 120 88.3
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 3.5e-59 233.4 216 57.9
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 8.7e-58 228.8 136 77.2
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.3e-49 200.3 114 75.4
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.6e-46 190.7 119 75.6
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 2.9e-45 187.2 251 47.8
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.2e-30 138.7 83 73.5
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.7e-24 118.2 62 83.9
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.8e-24 117.5 99 56.6
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.6e-22 111.7 105 54.3
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 7.7e-22 109.4 67 70.1
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 3.8e-21 107.1 177 39.0
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 4.2e-20 103.6 61 73.8
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 9.1e-15 85.9 68 60.3
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.7e-08 65.1 53 58.5
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 2.2e-08 64.7 43 65.1


User provided reference genes

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