Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 0.0e+00 1361.7 762 100.0
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 3.5e-165 586.3 787 52.7
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 5.0e-148 529.3 782 48.6
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.4e-144 516.2 798 48.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.9e-143 513.5 808 50.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.1e-142 511.5 812 46.4
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 7.8e-141 505.4 787 48.9
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.6e-138 497.7 794 45.0
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 4.7e-138 496.1 789 48.2
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.8e-137 494.2 791 47.2
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 8.9e-137 491.9 786 47.8
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 8.9e-137 491.9 787 48.3
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 8.9e-137 491.9 795 48.2
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.4e-134 484.6 755 44.9
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.9e-134 484.2 754 44.8
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.2e-133 481.5 752 46.3
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.6e-133 479.6 788 47.1
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.0e-132 476.9 816 46.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.3e-131 473.0 778 45.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.8e-130 470.3 801 46.2
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 6.9e-129 465.7 806 45.0
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.6e-128 463.8 778 43.4
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.4e-128 463.4 800 42.4
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.9e-127 460.3 802 45.6
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.4e-126 458.0 792 47.1
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.4e-126 456.1 801 44.2
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.5e-125 453.4 817 43.9
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-124 451.4 782 47.3
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.9e-124 449.9 803 44.3
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 4.3e-123 446.4 736 43.8
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 9.6e-123 445.3 792 47.3
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.3e-122 444.9 800 44.4
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.8e-122 443.7 798 46.4
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.4e-121 440.7 799 44.8
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 6.9e-121 439.1 793 43.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-120 438.0 794 44.8
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.9e-119 433.7 828 41.4
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 8.4e-119 432.2 782 47.1
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 7.1e-118 429.1 788 47.1
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 9.3e-118 428.7 785 45.6
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.7e-116 422.5 748 41.7
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 8.7e-116 422.2 737 44.4
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.1e-114 417.5 789 45.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 4.8e-114 416.4 810 41.4
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 6.2e-114 416.0 832 43.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.2e-112 411.8 830 43.1
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 4.2e-110 403.3 802 41.8
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 6.0e-109 399.4 874 41.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.0e-108 398.7 780 41.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.5e-107 394.0 801 41.7
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 5.6e-107 392.9 761 45.1
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 9.0e-105 385.6 779 40.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.0e-104 384.4 787 40.9
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.7e-103 381.3 817 39.8
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.8e-103 380.2 784 40.1
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 3.2e-102 377.1 791 43.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 7.1e-102 375.9 776 42.4
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 9.3e-102 375.6 733 43.7
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.2e-101 375.2 646 46.7
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.5e-101 373.6 712 44.0
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 6.0e-101 372.9 747 39.9
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.3e-100 370.9 788 39.7
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.3e-99 366.7 710 43.5
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.4e-97 360.9 768 44.5
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 2.0e-96 357.8 798 39.3
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.6e-96 357.5 785 38.2
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 7.6e-96 355.9 798 42.7
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.9e-95 354.0 781 42.3
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 3.8e-95 353.6 782 37.7
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 3.8e-95 353.6 715 41.5
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 5.0e-95 353.2 722 43.2
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 5.0e-95 353.2 807 39.7
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.9e-94 351.3 859 38.8
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 9.4e-94 349.0 768 40.5
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 7.9e-93 345.9 740 39.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.3e-92 344.4 763 38.9
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 3.9e-92 343.6 802 39.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 5.1e-92 343.2 766 40.5
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 5.1e-92 343.2 761 38.0
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.7e-91 339.0 773 40.8
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.2e-90 337.8 741 37.7
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 8.2e-90 335.9 794 38.9
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.4e-89 335.1 761 37.7
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.0e-88 331.3 787 37.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 5.9e-88 329.7 646 39.0
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 7.7e-88 329.3 776 39.3
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 5.0e-87 326.6 749 40.1
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.2e-85 322.0 800 37.2
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.7e-85 320.9 738 37.1
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 6.3e-82 309.7 721 35.9
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 2.4e-81 307.8 798 36.6
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.2e-79 301.2 806 35.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.8e-79 300.4 769 36.0
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 8.5e-79 299.3 796 37.7
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.4e-78 298.5 777 38.1
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-77 295.4 820 33.8
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.7e-77 294.3 766 38.5
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.6e-77 293.9 747 36.9
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.6e-77 293.9 769 37.5
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 8.0e-77 292.7 808 36.9
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.0e-76 292.4 686 39.4
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.4e-76 292.0 802 35.0
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.8e-76 291.6 761 37.1
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-76 291.6 748 38.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.3e-76 291.2 737 37.0
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.1e-75 288.9 782 37.1
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 5.7e-75 286.6 849 33.9
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 1.4e-73 282.0 739 36.4
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.4e-73 281.2 732 36.9
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 3.1e-73 280.8 825 34.5
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 6.5e-71 273.1 754 36.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 5.5e-70 270.0 822 36.1
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 3.7e-66 257.3 730 33.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.7e-64 251.1 728 33.4
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.8e-63 247.3 743 35.1
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.5e-62 243.4 797 34.9
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 7.2e-62 243.0 762 33.7
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.6e-61 240.7 776 33.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.0e-59 235.0 713 33.8
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.4e-59 234.2 789 34.0
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 3.1e-57 227.6 775 34.2
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 3.1e-57 227.6 775 34.2
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 7.0e-57 226.5 769 33.9
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.5e-54 218.0 785 33.4
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.0e-52 210.7 800 35.1
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.2e-51 209.1 651 34.1
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.5e-48 197.6 557 33.9
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.9e-48 196.8 752 29.7
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.0e-47 196.1 630 32.9
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.3e-47 195.7 779 33.4
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 8.6e-47 193.0 874 31.8
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.5e-46 191.4 736 32.5
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.3e-46 191.0 865 29.8
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-45 188.3 747 30.8
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.7e-45 187.2 747 30.7
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 4.7e-45 187.2 872 30.5
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 1.8e-44 185.3 726 30.6
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 4.4e-43 180.6 701 32.0
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 7.5e-43 179.9 682 31.8
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 7.5e-43 179.9 703 30.0
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.2e-42 178.3 685 31.5
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.2e-42 178.3 822 31.5
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-41 175.6 495 39.6
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.2e-41 174.5 228 49.1
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.5e-38 164.9 729 33.1
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 3.3e-38 164.5 423 36.9
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 9.5e-38 162.9 168 56.0
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.8e-37 161.4 725 28.8
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.4e-36 159.1 245 47.8
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.9e-36 156.4 447 34.5
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.6e-35 154.8 211 48.8
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 3.4e-35 154.5 222 48.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.9e-34 151.4 736 30.0
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.1e-33 149.4 491 31.0
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.1e-31 140.6 161 56.5
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.2e-29 136.0 229 42.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.7e-29 134.0 511 33.1
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 8.9e-28 129.8 159 52.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.2e-27 129.4 129 51.2
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 4.4e-27 127.5 145 52.4
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.3e-26 125.9 178 43.8
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 3.5e-24 117.9 109 67.9
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.5e-19 102.4 120 61.7
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.1e-16 92.0 194 38.1
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.2e-13 80.5 405 26.9
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.4e-11 74.7 268 28.7
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.1e-09 69.7 49 77.6
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.9e-09 68.9 75 58.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.6e-08 65.9 715 24.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 6.0e-08 63.9 313 27.8
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.6e-07 60.5 312 25.3
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 8.7e-07 60.1 327 25.1
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-06 59.7 412 24.3
Cfa006246 Carpinus fangiana HOM05D002615 ORTHO05D002913 1.9e-06 58.9 54 51.9
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.9e-06 58.9 318 26.1
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 2.5e-06 58.5 343 25.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 5.6e-06 57.4 351 24.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 7.3e-06 57.0 91 47.3
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 7.3e-06 57.0 80 47.5
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 7.3e-06 57.0 341 27.0
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 7.3e-06 57.0 82 46.3


User provided reference genes

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