Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.9e-135 485.0 275 100.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 7.1e-76 288.1 291 61.9
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 3.5e-75 285.8 295 61.0
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.2e-72 277.3 268 62.7
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 3.6e-72 275.8 284 62.0
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 4.0e-71 272.3 217 69.6
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 4.4e-70 268.9 265 60.8
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 7.6e-70 268.1 274 60.2
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 1.7e-69 266.9 295 57.6
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 2.2e-69 266.5 242 66.1
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 3.8e-69 265.8 291 57.0
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.1e-68 264.2 275 60.4
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.9e-68 263.5 271 62.0
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 1.9e-68 263.5 205 72.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 2.4e-68 263.1 260 61.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 9.3e-68 261.2 256 61.7
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 9.3e-68 261.2 280 57.9
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.2e-67 260.8 256 60.9
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.2e-67 260.8 284 57.0
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.6e-67 260.4 269 58.4
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 2.1e-67 260.0 271 60.1
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.3e-66 257.3 214 67.8
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.3e-66 256.5 223 65.5
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.0e-66 256.1 269 58.4
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 3.9e-66 255.8 274 58.0
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 5.1e-66 255.4 295 55.3
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 3.3e-65 252.7 240 62.1
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 3.3e-65 252.7 294 54.8
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 7.3e-65 251.5 273 56.8
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 7.3e-65 251.5 234 64.5
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.1e-64 250.0 211 65.9
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.8e-63 246.9 275 57.5
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.8e-63 246.9 251 57.0
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 3.1e-63 246.1 274 57.7
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 6.9e-63 245.0 255 59.2
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.2e-62 244.2 246 60.6
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.2e-62 244.2 221 64.7
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 2.0e-62 243.4 231 61.0
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 2.6e-62 243.0 285 54.7
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 3.4e-62 242.7 268 58.2
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.4e-62 242.7 270 59.6
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.4e-62 242.7 279 58.8
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 9.9e-62 241.1 272 58.1
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 9.9e-62 241.1 279 58.4
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 9.9e-62 241.1 280 54.6
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.3e-61 240.7 219 63.5
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 2.2e-61 240.0 212 65.6
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 2.2e-61 240.0 227 59.9
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 2.2e-61 240.0 272 55.5
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.9e-61 238.8 283 54.8
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 4.9e-61 238.8 226 59.3
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 6.4e-61 238.4 195 67.2
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 8.4e-61 238.0 277 56.3
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 8.4e-61 238.0 285 53.3
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.1e-60 237.7 207 67.1
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 1.9e-60 236.9 277 55.6
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 4.2e-60 235.7 268 55.2
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 4.2e-60 235.7 279 57.3
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 4.2e-60 235.7 262 56.1
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 7.1e-60 235.0 284 54.6
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.2e-59 234.2 270 53.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 6.0e-59 231.9 278 55.4
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.3e-58 230.7 253 56.1
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.3e-58 230.7 257 58.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.3e-58 230.7 208 61.1
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 1.3e-58 230.7 322 50.0
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.7e-58 230.3 286 53.1
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.0e-58 229.6 284 53.2
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 5.1e-58 228.8 220 59.5
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 6.6e-58 228.4 262 55.3
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 6.6e-58 228.4 224 57.6
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 6.6e-58 228.4 224 57.6
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.3e-57 226.1 214 61.7
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 1.3e-56 224.2 215 60.0
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.6e-56 223.8 273 53.5
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 3.6e-56 222.6 228 57.0
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 8.1e-56 221.5 228 56.6
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 8.1e-56 221.5 228 56.6
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.1e-55 221.1 211 62.6
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 2.4e-55 219.9 214 61.7
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 2.4e-55 219.9 274 51.8
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.4e-55 219.9 282 51.8
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.2e-54 217.6 208 59.6
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 2.6e-54 216.5 208 58.7
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 7.6e-54 214.9 269 53.5
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 6.4e-53 211.8 194 64.9
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 8.4e-53 211.5 253 52.2
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 2.1e-51 206.8 221 61.5
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 4.6e-51 205.7 211 54.5
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 4.6e-51 205.7 211 54.5
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 7.9e-51 204.9 166 66.9
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 3.0e-50 203.0 193 63.2
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 3.9e-50 202.6 198 62.1
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.1e-50 202.2 283 51.2
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 5.1e-50 202.2 282 51.1
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.6e-49 198.7 279 50.2
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 2.0e-46 190.3 231 50.2
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 7.1e-44 181.8 178 58.4
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 2.1e-43 180.3 182 59.3
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.7e-43 179.9 209 53.1
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 4.3e-41 172.6 266 47.7
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.3e-41 172.6 208 51.9
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 2.8e-40 169.9 154 60.4
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 4.8e-40 169.1 196 52.6
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 4.2e-36 156.0 208 48.1
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 6.1e-35 152.1 216 46.3
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 2.3e-34 150.2 196 48.5
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 3.0e-34 149.8 140 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.5e-33 147.5 198 49.5
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.6e-32 144.1 138 62.3
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.4e-31 141.0 204 47.1
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.5e-30 137.5 127 63.8
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 7.7e-30 135.2 220 43.6
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 3.6e-27 126.3 137 58.4
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 3.6e-27 126.3 137 58.4
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 7.9e-27 125.2 154 50.0
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 2.3e-26 123.6 102 64.7
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 9.7e-25 118.2 183 43.7
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 2.2e-24 117.1 125 56.8
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.7e-21 107.5 148 45.9
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 1.1e-20 104.8 165 49.7
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 2.7e-19 100.1 138 47.1
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 7.9e-19 98.6 226 37.6
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 3.9e-18 96.3 226 36.3
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.1e-17 94.7 140 46.4
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 7.4e-17 92.0 74 67.6
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 5.3e-15 85.9 71 67.6
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.9e-13 80.1 62 67.7
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 5.0e-13 79.3 148 37.2
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 6.1e-11 72.4 185 31.4
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 5.2e-10 69.3 58 63.8
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 1.4e-07 61.2 44 65.9
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.8e-07 60.8 76 52.6
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.5e-06 56.6 42 66.7
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 3.5e-06 56.6 54 53.7


User provided reference genes

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