Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.5e-47 192.6 100 100.0
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 2.1e-25 119.0 79 79.7
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.6e-22 108.2 81 69.1
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.6e-22 108.2 81 69.1
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 3.6e-22 108.2 81 71.6
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 3.1e-21 105.1 98 58.2
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 5.3e-21 104.4 80 67.5
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 3.4e-20 101.7 81 65.4
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.8e-20 100.9 81 64.2
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 9.9e-20 100.1 78 66.7
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.7e-19 99.4 81 63.0
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 2.2e-19 99.0 78 62.8
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 3.8e-19 98.2 65 73.8
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 4.9e-19 97.8 81 61.7
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 8.4e-19 97.1 78 67.9
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 8.4e-19 97.1 81 64.2
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 1.4e-18 96.3 71 67.6
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 2.4e-18 95.5 78 67.9
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 3.2e-18 95.1 78 61.5
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 4.2e-18 94.7 80 61.2
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 4.2e-18 94.7 89 57.3
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 4.2e-18 94.7 67 71.6
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 7.1e-18 94.0 78 62.8
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 7.1e-18 94.0 66 72.7
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 9.3e-18 93.6 78 65.4
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.2e-17 93.2 64 71.9
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.6e-17 91.3 66 69.7
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 4.6e-17 91.3 78 62.8
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 4.6e-17 91.3 59 81.4
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 6.0e-17 90.9 68 67.6
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.0e-16 90.1 63 71.4
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.0e-16 90.1 64 68.8
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.3e-16 89.7 55 78.2
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.3e-16 89.7 66 69.7
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.3e-16 89.7 90 63.3
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.8e-16 89.4 68 66.2
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.8e-16 89.4 86 57.0
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 1.8e-16 89.4 78 59.0
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 3.9e-16 88.2 67 65.7
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 6.7e-16 87.4 67 64.2
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 8.7e-16 87.0 62 71.0
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.1e-15 86.7 66 66.7
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.1e-15 86.7 66 66.7
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.1e-15 86.7 89 52.8
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 1.5e-15 86.3 68 58.8
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.9e-15 85.9 68 58.8
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.9e-15 85.9 68 58.8
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 1.9e-15 85.9 68 58.8
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.9e-15 85.9 64 70.3
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 1.9e-15 85.9 90 52.2
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.5e-15 85.5 61 67.2
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 2.5e-15 85.5 68 58.8
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.3e-15 85.1 74 58.1
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 4.3e-15 84.7 68 58.8
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 4.3e-15 84.7 68 58.8
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 4.3e-15 84.7 66 65.2
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 4.3e-15 84.7 78 56.4
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 5.6e-15 84.3 68 60.3
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 5.6e-15 84.3 60 71.7
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 5.6e-15 84.3 60 71.7
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 5.6e-15 84.3 90 53.3
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 7.4e-15 84.0 68 60.3
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 7.4e-15 84.0 66 62.1
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 9.6e-15 83.6 70 60.0
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 9.6e-15 83.6 66 68.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.3e-14 83.2 68 58.8
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 1.6e-14 82.8 81 53.1
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 2.1e-14 82.4 60 68.3
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 2.1e-14 82.4 58 74.1
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 2.8e-14 82.0 68 58.8
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 6.2e-14 80.9 58 67.2
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 8.1e-14 80.5 66 62.1
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 8.1e-14 80.5 81 54.3
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.4e-13 79.7 68 58.8
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 3.1e-13 78.6 67 65.7
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 4.0e-13 78.2 58 62.1
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 5.3e-13 77.8 68 55.9
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 5.3e-13 77.8 60 65.0
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 5.3e-13 77.8 66 59.1
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 9.0e-13 77.0 59 69.5
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 4.5e-12 74.7 66 57.6
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 4.5e-12 74.7 59 66.1
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 3.8e-11 71.6 48 68.8
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 4.9e-11 71.2 54 63.0
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.5e-10 68.9 88 48.9
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 2.5e-10 68.9 48 66.7
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 7.1e-10 67.4 47 68.1
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 9.3e-10 67.0 56 58.9
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.2e-09 66.6 91 48.4
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.6e-09 66.2 60 58.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.6e-09 64.7 62 50.0
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 6.0e-09 64.3 47 61.7
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 7.9e-09 63.9 63 52.4
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 3.9e-08 61.6 49 59.2
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.9e-08 61.6 47 61.7
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 1.5e-07 59.7 63 55.6
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.9e-07 59.3 47 57.4
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 3.7e-06 55.1 59 52.5
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 6.2e-06 54.3 82 50.0
Haze_09525 Corylus avellana HOM05D008666 ORTHO05D009871 6.2e-06 54.3 49 55.1
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 8.2e-06 53.9 64 51.6


User provided reference genes

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