Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.9e-150 535.8 269 100.0
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 5.4e-113 411.4 266 76.3
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.2e-112 410.2 272 74.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.6e-112 409.8 272 74.3
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.1e-112 409.5 275 71.6
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 6.0e-112 407.9 272 72.4
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 3.0e-111 405.6 269 74.0
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 5.1e-111 404.8 274 72.3
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 6.6e-111 404.4 269 74.7
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 8.6e-111 404.1 279 70.3
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.1e-110 403.7 270 74.1
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.1e-110 403.7 278 71.9
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.5e-110 403.3 269 73.6
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 2.5e-110 402.5 278 72.7
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 3.3e-110 402.1 275 69.8
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 5.6e-110 401.4 273 72.5
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.6e-109 399.8 277 72.2
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.6e-109 399.8 274 72.3
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.6e-109 399.8 240 79.6
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 4.7e-109 398.3 272 71.3
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.4e-108 396.7 271 72.3
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.4e-108 396.0 269 71.0
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 6.9e-108 394.4 271 70.1
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 8.9e-108 394.0 271 70.8
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 8.9e-108 394.0 274 71.9
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-107 393.7 273 72.5
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.5e-107 393.3 273 72.5
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.5e-107 393.3 276 72.5
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 2.0e-107 392.9 269 69.9
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 2.0e-107 392.9 276 70.7
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 3.4e-107 392.1 269 69.5
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 4.4e-107 391.7 270 70.4
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 4.4e-107 391.7 272 72.4
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 7.6e-107 391.0 272 71.3
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 7.6e-107 391.0 274 69.0
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 9.9e-107 390.6 278 70.5
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-106 390.2 272 70.6
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.7e-106 389.8 277 70.0
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 6.4e-106 387.9 274 69.0
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 8.4e-106 387.5 270 71.1
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.4e-105 386.7 279 68.8
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 2.4e-105 386.0 271 68.3
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 3.2e-105 385.6 277 70.0
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.2e-105 385.6 237 80.2
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 3.2e-105 385.6 276 67.4
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 4.2e-105 385.2 274 67.5
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 5.4e-105 384.8 270 68.1
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.6e-104 383.3 274 70.1
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 2.1e-104 382.9 279 68.1
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 2.1e-104 382.9 271 70.1
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 2.1e-104 382.9 276 67.0
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 2.7e-104 382.5 270 68.9
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.7e-104 382.5 276 70.7
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 2.7e-104 382.5 276 66.7
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 4.6e-104 381.7 272 70.2
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.0e-104 381.3 277 69.7
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.0e-103 380.6 277 69.7
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.3e-103 380.2 275 69.5
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 1.3e-103 380.2 272 69.5
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.3e-103 379.4 272 70.6
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.6e-103 377.9 277 69.7
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 8.7e-103 377.5 277 70.0
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 3.3e-102 375.6 277 69.0
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 3.3e-102 375.6 273 66.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 4.3e-102 375.2 269 68.4
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 7.3e-102 374.4 272 67.3
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.6e-101 373.2 274 67.9
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.6e-101 373.2 275 67.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.1e-101 372.9 273 67.8
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 2.8e-101 372.5 272 66.5
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 2.8e-101 372.5 269 66.5
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 4.8e-101 371.7 275 66.9
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 8.1e-101 370.9 271 68.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 8.1e-101 370.9 268 68.3
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.4e-100 370.2 274 67.2
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.4e-100 370.2 269 68.8
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.4e-100 370.2 230 76.5
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.4e-100 369.4 271 66.1
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 3.1e-100 369.0 276 64.1
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 9.0e-100 367.5 272 65.4
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 9.0e-100 367.5 269 66.2
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 2.6e-99 365.9 279 66.7
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 2.6e-99 365.9 269 66.5
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 3.4e-99 365.5 234 73.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 3.4e-99 365.5 234 75.2
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 5.8e-99 364.8 268 67.5
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 2.9e-98 362.5 303 63.4
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 3.2e-97 359.0 278 64.4
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 3.2e-97 359.0 275 67.6
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 7.1e-97 357.8 281 63.0
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.1e-96 356.3 273 64.8
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.1e-96 356.3 273 64.8
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 2.1e-96 356.3 265 64.5
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.0e-96 354.8 274 64.2
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 6.0e-96 354.8 270 62.2
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 6.0e-96 354.8 269 62.5
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.0e-95 354.0 286 63.3
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 2.3e-95 352.8 272 63.6
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 2.3e-95 352.8 272 63.6
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 2.3e-95 352.8 280 62.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.1e-94 350.5 285 61.8
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.9e-94 349.7 235 71.5
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.9e-94 349.7 268 63.4
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 7.4e-94 347.8 286 61.5
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 2.8e-93 345.9 285 61.1
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.8e-93 345.9 285 60.7
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.6e-93 345.5 288 59.7
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 4.8e-93 345.1 282 61.3
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 2.4e-92 342.8 281 60.1
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.4e-92 342.8 280 61.1
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.1e-92 342.4 285 60.4
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.1e-92 342.4 283 60.4
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 3.1e-92 342.4 285 60.4
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 5.3e-92 341.7 281 60.1
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 5.3e-92 341.7 285 60.0
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 5.3e-92 341.7 285 60.0
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 9.0e-92 340.9 281 59.8
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-91 340.5 285 59.6
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-91 340.5 285 59.6
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.0e-91 339.7 283 60.8
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 4.5e-91 338.6 285 59.6
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.7e-90 336.7 280 60.0
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.7e-90 336.7 280 60.0
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 3.8e-90 335.5 271 61.6
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 4.9e-90 335.1 284 59.5
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 4.9e-90 335.1 284 59.5
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 4.9e-90 335.1 277 61.4
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 6.4e-90 334.7 280 60.4
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 1.9e-89 333.2 282 59.9
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 1.9e-89 333.2 282 59.9
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 7.1e-89 331.3 284 59.5
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 1.2e-88 330.5 282 59.2
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 4.6e-88 328.6 283 59.0
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 4.6e-88 328.6 283 59.0
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 3.0e-87 325.9 269 61.7
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 5.6e-86 321.6 270 59.6
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 7.4e-86 321.2 272 60.3
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.1e-84 315.8 246 65.9
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.3e-84 315.1 240 65.0
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 1.2e-83 313.9 273 57.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 7.6e-83 311.2 285 56.8
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.9e-81 306.6 236 62.7
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 5.5e-81 305.1 270 59.6
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 4.6e-80 302.0 279 56.6
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.0e-80 301.6 271 59.0
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 5.7e-78 295.0 273 57.9
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.4e-76 290.4 185 73.5
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 7.6e-75 284.6 266 52.6
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.8e-71 273.5 198 65.2
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 2.2e-66 256.5 272 47.4
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.6e-64 250.4 214 57.5
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.7e-61 239.2 181 66.3
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 1.0e-58 231.1 186 60.8
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.3e-58 230.7 235 47.7
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.5e-57 226.5 158 72.8
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 3.6e-56 222.6 153 72.5
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.2e-53 213.4 238 49.2
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 2.0e-51 206.8 280 39.3
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 6.5e-50 201.8 152 63.2
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 2.8e-45 186.4 205 47.3
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-44 184.1 170 58.2
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 3.2e-41 172.9 234 38.0
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 2.3e-34 150.2 136 58.1
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 2.3e-34 150.2 136 58.1
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 2.3e-34 150.2 136 58.1
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.3e-25 118.6 180 39.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.8e-20 104.0 113 49.6
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-19 100.9 115 43.5
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.1e-17 94.7 74 59.5


User provided reference genes

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