Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.2e-150 533.5 262 100.0
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-125 453.0 335 71.9
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.5e-110 401.4 311 70.1
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 3.2e-94 349.0 287 63.1
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 7.4e-91 337.8 333 57.4
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 8.2e-90 334.3 333 53.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 6.9e-89 331.3 336 54.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.5e-88 330.1 336 53.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.5e-88 330.1 331 54.1
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.5e-88 328.6 331 53.5
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 8.5e-87 324.3 336 53.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 8.5e-87 324.3 336 53.3
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.1e-86 323.9 333 52.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.4e-86 323.6 338 53.3
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 3.2e-86 322.4 336 53.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 5.5e-86 321.6 337 53.4
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.2e-86 321.2 336 53.6
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 7.2e-86 321.2 336 54.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.2e-85 320.5 334 53.6
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 2.1e-85 319.7 337 53.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.6e-85 318.9 338 51.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.6e-85 318.9 336 53.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.7e-85 318.5 331 51.7
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.7e-85 318.5 337 52.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.7e-85 318.5 337 52.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 6.1e-85 318.2 332 51.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 6.1e-85 318.2 335 51.9
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 7.9e-85 317.8 335 53.7
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 7.9e-85 317.8 339 52.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.0e-84 317.4 332 51.2
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.4e-84 317.0 337 52.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.8e-84 316.6 338 50.3
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.8e-84 316.6 334 51.2
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.3e-84 316.2 337 51.6
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.3e-84 316.2 336 53.3
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.3e-84 316.2 337 53.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.0e-84 315.8 337 51.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.9e-84 315.5 340 52.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 5.1e-84 315.1 341 51.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.5e-83 313.5 336 52.7
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.0e-83 313.2 337 52.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.6e-83 312.8 339 52.2
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 7.4e-83 311.2 334 50.6
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.7e-82 310.1 337 52.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.7e-82 308.9 337 50.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.8e-82 308.5 330 52.7
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.8e-82 308.5 330 52.7
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 6.3e-82 308.1 327 52.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.3e-82 308.1 330 52.4
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.1e-81 307.4 340 51.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.8e-81 306.6 331 50.2
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.4e-81 306.2 339 51.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.4e-81 306.2 335 50.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.4e-81 306.2 339 51.0
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 5.3e-81 305.1 328 50.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.3e-81 305.1 329 50.8
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 9.1e-81 304.3 331 51.1
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.5e-80 303.5 332 50.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.0e-80 303.1 339 50.7
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.5e-80 302.4 339 49.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 7.7e-80 301.2 336 49.7
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 7.7e-80 301.2 333 50.2
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.2e-79 299.7 333 48.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 5.0e-79 298.5 336 48.5
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.0e-79 298.5 334 50.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 8.5e-79 297.7 332 49.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-78 297.4 336 49.1
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-78 297.4 336 49.1
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.1e-78 297.4 336 48.8
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.4e-78 297.0 336 50.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.4e-78 297.0 336 49.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.5e-78 296.2 330 50.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 3.2e-78 295.8 337 48.1
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 4.2e-78 295.4 336 48.8
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 5.5e-78 295.0 336 48.5
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 5.5e-78 295.0 336 48.5
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 7.2e-78 294.7 338 48.2
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 9.4e-78 294.3 330 49.4
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.1e-77 293.1 347 47.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 2.7e-77 292.7 331 49.2
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 3.6e-77 292.4 331 49.2
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 4.7e-77 292.0 337 48.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.1e-77 291.6 333 50.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.0e-76 290.8 337 48.7
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.2e-76 288.5 333 49.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 6.7e-76 288.1 328 47.6
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 6.7e-76 288.1 332 50.6
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.1e-75 287.3 333 48.0
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-75 287.0 333 48.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.4e-75 284.6 326 49.4
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.7e-74 282.3 336 47.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.5e-70 269.6 330 46.1
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 4.2e-70 268.9 325 46.5
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 9.4e-70 267.7 331 45.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.0e-68 262.7 337 45.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.4e-67 258.8 323 43.7
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.0e-63 247.7 274 51.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.7e-63 246.9 360 41.7
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.2e-62 242.3 271 49.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.1e-61 240.0 242 51.7
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.1e-61 238.4 342 43.3
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 4.1e-57 225.7 338 39.1
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.7e-50 202.6 149 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 8.3e-50 201.4 324 35.8
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.4e-49 200.7 330 37.9
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.0e-48 196.8 384 35.4
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 4.5e-48 195.7 146 67.1
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.0e-45 184.9 123 72.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.0e-44 182.6 327 33.6
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.0e-43 180.3 124 70.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.8e-43 178.7 317 36.3
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-41 173.7 124 66.9
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 3.9e-39 166.0 227 41.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.5e-38 163.3 230 42.6
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.4e-33 147.5 99 69.7
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.9e-33 147.1 95 74.7
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 4.1e-33 146.0 388 27.3
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.5e-32 142.9 145 51.7
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 6.0e-32 142.1 100 69.0
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.6e-31 138.7 101 63.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.3e-28 130.2 296 32.8
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.4e-20 104.4 73 60.3
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-19 100.5 79 63.3
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 4.4e-19 99.4 118 51.7
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 9.3e-17 91.7 349 22.1
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 4.6e-16 89.4 62 71.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.6e-13 79.7 286 26.2
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-12 77.8 69 58.0
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 4.0e-12 76.3 55 67.3
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-10 71.2 92 41.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.0e-07 60.1 117 25.6
arahy.Tifrunner.gnm1.ann1.PZB3A5 Arachis hypogaea HOM05D004092 ORTHO05D086432 1.1e-06 58.2 30 86.7
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 7.3e-06 55.5 37 64.9


User provided reference genes

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