Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.7e-169 598.2 317 100.0
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.2e-150 535.8 309 88.0
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.4e-138 495.4 299 84.6
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.5e-122 441.0 309 75.4
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.0e-119 433.0 291 77.7
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.0e-118 428.3 309 74.4
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.3e-107 392.9 309 69.6
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.9e-99 364.4 309 66.0
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.7e-94 350.1 284 68.3
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 1.1e-64 251.1 318 45.9
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.9e-62 242.7 334 45.5
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 9.7e-61 238.0 312 45.2
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 2.8e-60 236.5 303 43.9
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 6.3e-60 235.3 362 39.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.4e-59 234.2 321 44.9
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 3.1e-59 233.0 331 44.4
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 6.9e-59 231.9 316 43.4
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.5e-58 230.7 308 43.5
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.6e-58 229.9 310 43.5
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.6e-58 229.9 326 43.6
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.3e-57 227.6 299 45.2
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.2e-57 226.9 371 38.3
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 8.5e-57 224.9 370 40.3
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.1e-56 224.6 340 42.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 3.2e-56 223.0 311 42.4
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 3.2e-56 223.0 367 39.2
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 4.2e-56 222.6 330 42.1
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.2e-55 221.1 381 37.0
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.6e-55 220.7 378 38.9
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 2.1e-55 220.3 370 39.2
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 4.6e-55 219.2 324 42.3
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 6.1e-55 218.8 384 39.6
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 6.1e-55 218.8 376 38.8
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.0e-54 218.0 392 39.3
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.9e-54 216.1 306 42.8
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 6.7e-54 215.3 303 43.6
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.1e-53 214.5 410 38.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 3.3e-53 213.0 375 36.5
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 3.3e-53 213.0 314 43.9
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 5.7e-53 212.2 303 41.6
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 7.4e-53 211.8 302 42.4
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 7.4e-53 211.8 305 41.0
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 9.7e-53 211.5 328 39.6
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 1.7e-52 210.7 409 36.7
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 3.7e-52 209.5 303 41.6
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.8e-51 207.2 331 39.0
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.3e-49 201.1 384 35.7
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 6.5e-49 198.7 333 35.4
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.4e-48 197.6 303 40.6
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 2.5e-48 196.8 325 40.9
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 5.5e-48 195.7 309 37.2
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 7.2e-48 195.3 317 38.2
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 7.2e-48 195.3 331 37.8
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 7.2e-48 195.3 435 34.3
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.1e-47 193.7 301 41.2
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 4.7e-47 192.6 309 37.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 6.1e-47 192.2 304 37.5
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 6.1e-47 192.2 301 38.2
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.0e-46 191.4 300 40.7
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 2.3e-46 190.3 351 35.6
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 5.2e-46 189.1 371 38.8
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 8.8e-46 188.3 304 37.8
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.1e-45 188.0 311 39.5
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.0e-45 187.2 307 38.8
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 4.4e-45 186.0 347 37.5
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 2.8e-44 183.3 391 33.5
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 3.7e-44 183.0 305 38.4
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 3.7e-44 183.0 306 38.2
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 4.8e-44 182.6 313 37.1
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.4e-43 181.0 310 39.7
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 3.1e-43 179.9 305 39.3
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 4.1e-43 179.5 305 38.7
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 5.3e-43 179.1 311 37.6
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 5.3e-43 179.1 305 38.7
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 5.3e-43 179.1 315 39.4
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 7.0e-43 178.7 305 38.0
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.2e-42 177.9 319 37.3
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.6e-42 177.6 305 40.7
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.6e-42 177.6 305 40.7
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 2.2e-41 173.7 307 36.8
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 5.0e-41 172.6 310 38.4
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.9e-40 170.6 304 36.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 3.2e-40 169.9 309 36.6
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.6e-39 167.5 300 37.7
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.2e-38 162.5 381 34.6
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 7.5e-37 158.7 339 32.7
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 9.7e-37 158.3 306 34.6
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 9.7e-37 158.3 304 37.2
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.2e-36 157.1 181 45.3
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.8e-36 156.8 311 35.0
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 4.1e-35 152.9 300 35.7
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 3.5e-34 149.8 308 34.1
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 5.9e-34 149.1 299 32.4
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 7.7e-34 148.7 308 34.1
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 2.2e-28 130.6 149 46.3
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.4e-27 127.1 434 29.0
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 5.4e-27 125.9 123 52.0
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 5.4e-27 125.9 255 34.1
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 7.0e-27 125.6 437 26.5
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 9.1e-27 125.2 140 51.4
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-25 120.9 144 45.1
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 6.5e-25 119.0 123 50.4
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 8.6e-25 118.6 171 42.7
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.4e-22 111.3 104 56.7
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 8.3e-20 102.1 102 50.0
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.7e-18 97.1 306 27.8
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.8e-14 84.3 185 31.9
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 6.8e-14 82.4 270 25.9
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 6.8e-14 82.4 81 50.6
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 6.8e-14 82.4 84 47.6
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.4e-13 80.1 79 45.6
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 1.7e-12 77.8 301 26.9
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.9e-12 76.3 55 58.2
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.1e-11 75.1 99 40.4
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 5.4e-11 72.8 44 70.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 8.6e-09 65.5 143 29.4
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 1.4e-06 58.2 308 23.1


User provided reference genes

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