Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-177 625.2 315 100.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.7e-137 491.9 339 79.1
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-136 489.2 369 72.9
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.5e-117 424.1 330 71.5
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-115 420.2 355 67.9
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.7e-106 388.3 332 66.3
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.7e-102 376.7 287 72.1
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.6e-102 374.4 335 63.9
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.5e-95 352.4 284 68.3
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 7.6e-74 281.6 371 46.1
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.2e-71 274.2 365 45.5
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.6e-71 273.9 353 44.2
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.0e-70 271.2 353 43.9
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.0e-70 269.6 358 45.0
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.0e-70 269.6 347 45.8
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 6.6e-70 268.5 353 43.9
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.6e-68 263.8 319 47.0
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 4.8e-68 262.3 325 47.1
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 4.8e-68 262.3 342 46.2
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.8e-67 260.4 395 42.8
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 6.9e-67 258.5 343 45.8
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.9e-65 253.1 383 42.6
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 1.4e-64 250.8 364 42.9
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 3.2e-64 249.6 387 42.1
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.2e-63 247.7 389 41.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.2e-63 247.7 381 42.8
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 2.7e-63 246.5 321 44.2
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 6.0e-63 245.4 433 37.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 7.9e-63 245.0 325 44.9
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 7.9e-63 245.0 322 44.4
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 2.3e-62 243.4 423 37.6
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 6.7e-62 241.9 321 44.2
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.1e-61 241.1 323 45.5
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.1e-61 241.1 432 36.6
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.5e-61 240.0 415 38.1
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 2.5e-61 240.0 418 39.2
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 3.3e-61 239.6 417 37.6
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 4.3e-61 239.2 382 40.6
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 9.6e-61 238.0 435 37.2
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.6e-60 237.3 331 43.8
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.6e-60 237.3 438 38.6
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 2.1e-60 236.9 358 43.0
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 2.1e-60 236.9 418 38.8
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 2.1e-60 236.9 376 40.7
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 2.8e-60 236.5 331 43.8
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 3.7e-60 236.1 359 40.7
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 8.1e-60 235.0 446 37.4
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.1e-59 234.6 431 36.4
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.4e-59 234.2 391 39.6
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.8e-59 233.8 332 43.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.8e-59 233.8 332 43.4
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 2.4e-59 233.4 365 41.9
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 3.1e-59 233.0 370 40.8
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 4.0e-59 232.6 333 43.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 5.3e-59 232.3 426 37.8
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 6.9e-59 231.9 322 43.8
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 9.0e-59 231.5 327 43.4
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.2e-58 231.1 315 44.1
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 1.2e-58 231.1 329 42.6
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.5e-58 230.7 337 44.5
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 2.0e-58 230.3 373 39.1
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.6e-58 229.9 365 40.5
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.6e-58 229.9 326 43.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 5.8e-58 228.8 456 35.3
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-57 227.3 325 42.5
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 2.9e-57 226.5 326 42.6
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.9e-57 226.5 456 37.1
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.1e-56 224.6 333 42.6
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.1e-56 224.6 339 41.9
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.9e-56 223.8 378 38.4
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.9e-56 223.8 330 43.0
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 2.4e-56 223.4 439 36.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 4.2e-56 222.6 332 42.2
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 4.2e-56 222.6 400 38.0
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 5.5e-56 222.2 327 42.2
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 3.5e-55 219.5 368 38.9
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.3e-54 217.6 327 42.8
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.0e-54 216.5 394 38.1
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.0e-54 216.5 388 37.6
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 5.1e-54 215.7 319 41.1
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.5e-53 213.4 489 31.9
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.3e-53 213.0 421 37.8
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 7.4e-53 211.8 362 37.6
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 4.5e-50 202.6 333 39.0
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 1.3e-46 191.0 429 33.8
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 5.1e-46 189.1 393 35.9
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 8.7e-46 188.3 360 35.3
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.1e-45 188.0 341 38.1
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-45 188.0 360 35.0
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 9.7e-45 184.9 323 39.3
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.4e-43 180.3 196 49.0
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.4e-43 180.3 345 37.7
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 2.5e-37 160.2 366 31.7
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.1e-35 154.8 482 28.2
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 6.9e-35 152.1 219 43.4
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 1.5e-34 151.0 209 44.5
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.5e-34 151.0 195 44.6
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.3e-33 147.9 214 40.7
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 5.0e-33 146.0 555 25.9
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.1e-32 144.8 192 46.4
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.1e-32 144.8 328 32.3
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 7.2e-32 142.1 483 27.3
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 3.0e-30 136.7 244 34.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 3.9e-30 136.3 155 48.4
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.5e-29 134.4 226 38.9
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 2.2e-25 120.6 150 45.3
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 8.5e-25 118.6 320 30.0
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 1.8e-19 100.9 320 26.2
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 5.9e-18 95.9 334 25.1
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.0e-17 95.1 79 57.0
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 2.9e-17 93.6 73 58.9
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 8.5e-17 92.0 167 39.5
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 1.5e-16 91.3 73 60.3
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.5e-16 91.3 77 55.8
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.2e-16 90.1 64 64.1
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.1e-15 87.4 151 34.4
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 1.4e-14 84.7 58 74.1
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 6.7e-14 82.4 317 24.9
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 9.1e-11 72.0 61 54.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 3.8e-09 66.6 50 62.0
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 6.8e-06 55.8 163 25.8


User provided reference genes

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