Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.7e-214 746.5 369 100.0
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.2e-165 585.9 398 77.1
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-140 503.8 390 71.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.0e-125 451.8 290 79.3
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.1e-123 444.9 309 75.4
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.8e-122 441.0 328 72.3
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.7e-114 414.8 301 73.4
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.6e-102 377.1 335 63.9
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.7e-97 358.6 335 61.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 2.3e-69 266.9 347 45.5
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 3.1e-66 256.5 346 43.9
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 8.9e-66 255.0 377 43.0
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 2.6e-65 253.4 358 43.0
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.3e-64 251.1 390 40.0
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.7e-64 250.8 374 40.4
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.9e-64 250.0 393 40.5
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 5.4e-63 245.7 393 40.5
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.5e-62 243.0 378 43.1
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 3.0e-61 240.0 416 38.0
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 6.6e-61 238.8 323 43.3
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 3.3e-60 236.5 378 39.9
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 4.3e-60 236.1 428 37.4
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 4.3e-60 236.1 386 39.9
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 4.3e-60 236.1 403 39.2
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 5.6e-60 235.7 427 37.9
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 5.6e-60 235.7 340 42.9
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.2e-59 234.6 387 39.0
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 4.7e-59 232.6 403 38.5
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 8.1e-59 231.9 340 41.8
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 1.4e-58 231.1 344 40.7
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.4e-58 231.1 326 41.7
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.8e-58 230.7 431 37.8
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 3.1e-58 229.9 409 37.7
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 3.1e-58 229.9 469 35.4
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 4.0e-58 229.6 443 37.0
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.2e-57 228.0 413 37.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 4.4e-57 226.1 367 41.1
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 9.9e-57 224.9 443 36.3
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.3e-56 224.6 418 38.3
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.3e-56 224.6 368 41.3
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.7e-56 224.2 382 39.0
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 2.2e-56 223.8 433 37.6
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 2.2e-56 223.8 359 39.8
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 4.9e-56 222.6 332 41.6
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.1e-55 221.5 418 37.6
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.4e-55 221.1 372 38.4
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 5.4e-55 219.2 411 37.5
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 9.2e-55 218.4 330 40.3
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.2e-54 218.0 325 41.5
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 3.5e-54 216.5 396 37.1
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.7e-53 214.2 527 31.9
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.9e-52 210.7 368 38.0
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.5e-52 210.3 368 38.6
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 7.3e-52 208.8 361 35.5
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 1.2e-51 208.0 335 38.2
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 3.6e-51 206.5 325 38.5
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 4.7e-51 206.1 332 40.7
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 6.2e-51 205.7 331 38.4
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 6.2e-51 205.7 335 38.8
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 8.1e-51 205.3 325 41.8
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.4e-50 204.5 366 36.6
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.8e-50 204.1 358 36.0
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 8.9e-50 201.8 363 38.0
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 9.9e-49 198.4 369 38.5
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 9.9e-49 198.4 334 39.5
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.3e-48 198.0 366 36.6
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.3e-48 198.0 333 39.3
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.7e-48 197.6 354 37.3
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 2.2e-48 197.2 359 37.9
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 3.8e-48 196.4 330 39.4
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 4.9e-48 196.1 343 38.5
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 6.4e-48 195.7 330 38.5
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 8.4e-48 195.3 405 36.3
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.1e-47 194.9 357 38.4
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.1e-47 194.9 382 36.4
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.4e-47 194.5 346 37.9
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.4e-47 193.7 242 43.0
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 9.3e-47 191.8 330 38.5
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 2.1e-46 190.7 422 33.9
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 3.5e-46 189.9 331 38.4
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 3.0e-45 186.8 331 38.1
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 3.0e-45 186.8 331 38.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 3.0e-45 186.8 331 37.8
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 5.6e-44 182.6 336 36.3
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.3e-43 181.4 325 38.5
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.8e-43 179.5 338 39.3
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 4.0e-42 176.4 358 36.3
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.0e-41 174.1 306 36.3
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.0e-41 174.1 306 36.9
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 2.2e-40 170.6 338 34.9
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 2.9e-40 170.2 414 33.1
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 2.9e-40 170.2 364 32.4
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 6.4e-40 169.1 374 34.2
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 4.2e-39 166.4 174 51.7
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.6e-38 164.5 184 48.9
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.0e-37 161.8 178 47.2
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.3e-36 156.8 158 50.0
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 7.3e-36 155.6 207 43.0
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.8e-35 153.7 158 49.4
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 7.1e-31 139.0 138 48.6
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.6e-30 137.9 135 50.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 3.5e-30 136.7 138 50.7
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 3.5e-30 136.7 135 49.6
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 8.7e-29 132.1 289 32.5
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.2e-25 121.7 105 53.3
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.8e-21 107.8 90 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 2.5e-20 104.0 349 27.8
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 3.7e-19 100.1 108 47.2
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 4.1e-18 96.7 245 33.1
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.2e-16 90.9 64 62.5
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.4e-15 88.2 77 53.2
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.2e-14 85.1 76 48.7
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.7e-14 84.0 65 56.9
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 8.2e-11 72.4 165 28.5
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.4e-07 61.6 196 27.0
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.5e-07 60.8 93 41.9
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.2e-07 60.5 94 38.3


User provided reference genes

Program Settings