Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.3e-178 628.2 311 100.0
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-142 510.0 302 87.1
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-133 479.6 334 77.8
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.2e-133 478.4 363 71.3
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.9e-126 455.7 332 73.5
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-105 387.1 332 66.3
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-101 373.2 301 67.8
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-99 366.7 309 66.0
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-96 356.3 335 61.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.4e-75 287.3 368 47.6
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.6e-74 283.1 317 51.4
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 9.8e-74 281.2 351 47.3
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.7e-73 279.3 360 46.4
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 8.3e-73 278.1 351 45.9
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 8.3e-73 278.1 351 45.9
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 3.1e-72 276.2 389 46.5
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 4.1e-72 275.8 303 51.5
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 7.7e-71 271.6 324 48.5
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.7e-70 270.4 347 46.4
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.3e-69 266.2 302 48.3
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 4.2e-69 265.8 360 45.3
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.2e-68 264.2 309 49.5
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.1e-68 263.5 307 48.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 2.8e-68 263.1 361 43.8
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 3.6e-68 262.7 305 48.9
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.3e-67 260.0 302 48.7
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 2.3e-67 260.0 320 47.8
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 2.3e-67 260.0 326 47.9
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 4.0e-67 259.2 379 43.5
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 5.2e-67 258.8 304 49.3
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 6.8e-67 258.5 316 47.5
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 8.9e-67 258.1 415 40.2
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.2e-66 257.7 393 42.7
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.2e-66 257.7 300 50.3
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.0e-66 256.9 432 39.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 2.0e-66 256.9 316 47.8
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.0e-66 256.9 331 48.6
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 3.4e-66 256.1 313 50.2
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 5.7e-66 255.4 316 48.7
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 7.5e-66 255.0 315 50.5
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 7.5e-66 255.0 315 50.5
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 2.2e-65 253.4 331 48.0
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 4.9e-65 252.3 379 43.5
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 8.3e-65 251.5 383 44.1
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.1e-64 251.1 308 48.7
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.1e-64 251.1 390 43.1
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.1e-64 251.1 376 43.1
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.4e-64 250.8 424 38.9
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 2.4e-64 250.0 312 47.1
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 3.2e-64 249.6 316 46.5
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 3.2e-64 249.6 308 47.1
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 9.2e-64 248.1 299 49.8
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 2.0e-63 246.9 443 40.0
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 2.7e-63 246.5 431 38.7
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 3.5e-63 246.1 306 48.0
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 3.5e-63 246.1 311 47.3
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.3e-62 244.2 435 39.8
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.3e-62 244.2 367 44.4
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 5.0e-62 242.3 323 45.5
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 5.0e-62 242.3 307 46.9
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 6.6e-62 241.9 320 47.2
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 6.6e-62 241.9 440 37.5
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.1e-61 241.1 417 39.3
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.5e-61 240.0 456 38.4
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 5.6e-61 238.8 456 38.2
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 7.3e-61 238.4 417 38.6
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 7.3e-61 238.4 401 39.9
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 9.5e-61 238.0 376 41.8
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 6.1e-60 235.3 417 39.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.2e-58 231.1 423 36.9
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.5e-58 230.7 378 38.9
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.0e-58 230.3 435 37.5
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 2.6e-58 229.9 368 40.2
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 3.4e-58 229.6 360 42.8
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 5.8e-58 228.8 421 39.9
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 9.8e-58 228.0 356 42.1
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.7e-57 227.3 375 40.3
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 3.7e-57 226.1 358 42.5
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 6.4e-57 225.3 355 42.0
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.4e-56 224.2 383 39.7
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 2.4e-56 223.4 426 37.6
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.7e-55 219.9 489 33.9
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.3e-54 217.6 383 38.9
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.3e-54 217.6 330 43.3
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.0e-54 215.7 430 35.3
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-53 214.5 358 40.5
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-53 214.5 358 40.5
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.2e-52 211.1 356 39.6
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 5.2e-51 205.7 338 41.7
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.2e-50 204.5 334 41.9
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.7e-49 200.7 268 46.6
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.1e-48 198.0 394 35.5
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.2e-44 184.5 246 41.5
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 5.2e-43 179.1 360 36.7
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 8.9e-43 178.3 177 54.2
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 9.9e-42 174.9 177 54.2
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.2e-41 173.7 482 29.9
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 4.9e-41 172.6 170 54.1
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 6.4e-41 172.2 176 54.0
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 6.0e-39 165.6 185 50.3
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.0e-38 164.9 305 36.1
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.3e-38 164.5 483 28.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 3.3e-37 159.8 190 48.9
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 8.9e-35 151.8 155 53.5
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 2.0e-34 150.6 148 53.4
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 5.1e-30 136.0 227 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 1.5e-29 134.4 329 31.9
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 3.2e-24 116.7 300 31.3
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 7.9e-23 112.1 98 57.1
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 5.6e-21 105.9 299 30.1
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 7.3e-21 105.5 331 27.5
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.8e-20 103.6 77 64.9
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 9.9e-18 95.1 94 53.2
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 4.9e-17 92.8 91 56.0
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 8.4e-17 92.0 91 51.6
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.9e-16 90.9 94 50.0
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 2.4e-16 90.5 73 58.9
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.6e-15 87.8 66 60.6
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 3.5e-15 86.7 56 67.9


User provided reference genes

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