Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.8e-254 880.2 442 100.0
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.1e-174 615.1 418 78.5
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-163 580.1 398 77.1
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-158 563.5 301 94.4
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-158 562.8 346 83.8
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-150 536.6 309 88.0
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.1e-146 521.5 338 80.8
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.7e-136 488.4 369 72.9
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.7e-132 476.9 363 71.3
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 1.1e-94 351.3 370 52.2
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 7.1e-94 348.6 378 51.6
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 6.6e-92 342.0 422 46.0
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 5.6e-91 339.0 422 45.5
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.3e-90 337.8 422 45.7
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 2.4e-89 333.6 368 50.5
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.1e-89 333.2 390 50.8
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 5.3e-89 332.4 396 49.7
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 5.8e-88 328.9 354 50.0
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 4.9e-87 325.9 488 41.8
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.2e-86 323.2 438 46.1
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 4.2e-86 322.8 444 44.1
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.2e-85 321.2 501 42.5
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.2e-85 321.2 350 50.0
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 2.1e-85 320.5 422 46.0
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 4.6e-85 319.3 449 45.2
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 7.9e-85 318.5 420 46.7
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 5.1e-84 315.8 397 47.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 6.6e-84 315.5 367 49.0
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.5e-83 314.3 416 44.0
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.5e-83 314.3 423 44.2
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 2.5e-83 313.5 429 45.0
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.6e-82 310.8 457 44.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 3.6e-82 309.7 426 44.4
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 3.6e-82 309.7 374 47.9
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 8.1e-82 308.5 386 47.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 2.4e-81 307.0 379 47.5
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 3.1e-81 306.6 368 47.3
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 4.0e-81 306.2 354 48.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 5.3e-81 305.8 456 42.3
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 6.9e-81 305.4 546 39.4
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 2.0e-80 303.9 401 45.1
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 2.6e-80 303.5 389 45.5
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 3.4e-80 303.1 413 43.6
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 5.8e-80 302.4 424 42.7
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.7e-79 300.8 436 43.1
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.4e-78 297.7 356 48.6
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.4e-78 297.7 390 47.4
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.4e-78 297.0 425 46.4
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 4.2e-78 296.2 393 44.0
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 7.1e-78 295.4 418 42.8
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.3e-76 291.2 346 48.3
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.5e-75 287.0 388 44.8
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 4.3e-75 286.2 401 44.4
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 5.6e-75 285.8 352 45.7
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 9.6e-75 285.0 387 42.4
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.7e-74 283.1 360 44.7
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.1e-73 281.6 354 47.5
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 1.8e-73 280.8 380 42.9
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 2.4e-73 280.4 439 41.0
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.5e-72 277.7 362 45.6
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 4.5e-72 276.2 357 45.1
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 5.8e-72 275.8 390 43.1
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 5.8e-72 275.8 358 44.7
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 7.6e-72 275.4 362 45.6
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.7e-71 274.2 370 44.6
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 2.9e-71 273.5 379 44.1
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 3.8e-71 273.1 383 42.0
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 8.4e-71 271.9 373 44.2
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 8.4e-71 271.9 354 46.0
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.1e-70 271.6 370 43.5
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.4e-70 271.2 387 42.9
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.4e-70 271.2 376 43.9
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 2.5e-70 270.4 387 42.9
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 3.2e-70 270.0 358 46.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 3.2e-70 270.0 358 46.4
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 3.2e-70 270.0 358 44.7
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 5.5e-70 269.2 372 44.9
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.6e-69 267.7 357 43.1
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 3.5e-69 266.5 363 44.1
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 6.0e-69 265.8 382 42.9
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 3.0e-68 263.5 362 43.9
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.6e-66 257.7 388 41.8
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 1.8e-65 254.2 435 40.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.8e-65 254.2 371 42.0
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 4.1e-65 253.1 361 42.4
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 3.4e-64 250.0 393 39.7
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.3e-63 248.1 366 40.2
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.9e-63 246.9 366 40.2
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.1e-62 245.0 365 41.4
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.6e-61 241.1 358 43.6
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 8.7e-60 235.3 376 41.0
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 8.2e-58 228.8 260 47.7
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 5.5e-54 216.1 559 30.9
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 9.4e-54 215.3 363 37.2
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.2e-53 214.9 482 32.4
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.5e-51 208.0 483 32.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 2.5e-51 207.2 195 56.4
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 8.2e-50 202.2 194 52.6
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.4e-49 201.4 201 54.2
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.5e-48 198.0 195 52.8
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 2.1e-45 187.6 219 47.5
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.7e-42 177.9 155 58.1
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.8e-42 177.2 359 34.5
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 9.1e-41 172.2 150 56.0
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 3.5e-40 170.2 299 34.1
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 1.6e-32 144.8 350 31.4
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.7e-29 134.0 249 36.9
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 6.1e-29 132.9 99 60.6
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.4e-25 120.9 77 72.7
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 4.1e-25 120.2 351 28.2
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.6e-24 118.2 354 28.2
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.2e-22 110.2 342 27.5
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 2.3e-20 104.4 84 58.3
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.5e-19 101.7 194 34.5
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.7e-18 98.2 91 52.7
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.7e-18 98.2 73 63.0
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.7e-18 97.1 93 49.5
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.8e-17 94.7 111 45.0
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 8.6e-15 85.9 55 69.1
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.3e-12 77.8 63 55.6
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 2.0e-11 74.7 157 29.9


User provided reference genes

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