Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 0.0e+00 1174.5 589 100.0
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 5.4e-291 1003.8 594 86.0
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.2e-287 992.6 594 83.5
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.6e-287 991.1 594 84.2
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.6e-287 991.1 599 83.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.3e-286 988.4 595 83.2
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 3.1e-286 988.0 603 83.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.1e-286 988.0 590 84.1
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 3.4e-285 984.6 591 83.2
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 3.8e-284 981.1 591 82.9
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 3.8e-284 981.1 591 82.7
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.1e-283 979.5 599 82.1
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.1e-283 979.5 592 83.6
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.4e-283 979.2 590 83.2
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.7e-282 974.9 589 83.4
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 7.8e-282 973.4 599 82.6
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 1.0e-281 973.0 590 82.7
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 3.9e-281 971.1 592 82.3
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.9e-280 968.8 574 84.3
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 3.3e-280 968.0 594 82.3
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 3.3e-280 968.0 589 82.2
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 4.3e-280 967.6 592 81.1
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.3e-280 966.8 584 81.7
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 3.6e-279 964.5 591 81.6
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 4.7e-279 964.1 596 81.2
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-278 963.0 584 81.2
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.4e-278 962.6 601 80.5
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.4e-278 962.6 590 81.4
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.1e-278 961.4 594 81.5
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.1e-278 961.4 596 81.0
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.2e-278 960.7 591 81.7
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 6.9e-278 960.3 583 82.5
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 8.9e-278 959.9 591 80.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 8.9e-278 959.9 589 80.8
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 2.6e-277 958.4 591 81.4
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 3.4e-277 958.0 589 81.5
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 4.4e-277 957.6 582 81.6
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 7.6e-277 956.8 584 81.2
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 7.6e-277 956.8 590 81.4
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 7.6e-277 956.8 589 80.3
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.3e-276 956.1 589 80.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.7e-276 955.7 587 80.4
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 2.2e-276 955.3 589 81.3
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.9e-276 954.9 596 80.7
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.9e-276 954.9 592 80.2
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.4e-275 951.8 551 84.4
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 4.2e-275 951.0 611 79.7
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 5.4e-275 950.7 595 80.0
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 5.4e-275 950.7 572 82.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 7.1e-275 950.3 591 80.0
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 1.2e-274 949.5 583 80.8
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.6e-274 949.1 591 79.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.6e-274 949.1 613 79.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.6e-274 949.1 589 79.8
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.1e-274 948.7 587 80.6
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.1e-274 948.7 578 81.7
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 3.5e-274 948.0 594 80.1
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.5e-274 948.0 589 79.8
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 6.0e-274 947.2 589 79.8
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 7.8e-274 946.8 550 83.5
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 1.3e-273 946.0 589 80.1
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.3e-273 946.0 589 79.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 6.6e-273 943.7 590 80.0
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 8.7e-273 943.3 587 79.9
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.5e-272 942.6 552 84.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 2.5e-272 941.8 592 79.1
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 3.3e-272 941.4 556 82.2
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.3e-272 941.4 589 79.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 4.3e-272 941.0 587 79.6
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 7.3e-272 940.3 589 79.8
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 9.6e-272 939.9 558 82.1
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.6e-271 939.1 598 80.3
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 3.1e-270 934.9 570 81.8
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.9e-270 933.7 600 79.7
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.5e-269 932.6 612 77.9
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 3.8e-268 927.9 589 79.3
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.1e-267 926.4 566 81.6
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 7.9e-266 920.2 594 79.3
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.0e-265 919.8 568 79.4
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.8e-265 919.1 553 81.4
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 5.1e-265 917.5 587 78.5
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 8.7e-265 916.8 599 76.8
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 4.3e-264 914.4 620 75.8
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 9.6e-264 913.3 587 78.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 6.4e-260 900.6 607 75.5
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 3.2e-259 898.3 628 74.4
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 9.6e-256 886.7 590 74.4
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.9e-254 880.6 590 77.1
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.3e-252 876.3 589 76.9
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.2e-252 875.5 584 74.3
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 3.2e-251 871.7 632 72.2
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.3e-251 870.2 589 76.4
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 4.6e-250 867.8 658 70.5
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.8e-249 865.9 555 76.0
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.5e-248 862.8 520 83.5
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-245 853.2 589 75.0
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.0e-244 850.1 574 75.1
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.3e-244 849.7 606 73.6
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.3e-244 849.7 574 74.9
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 3.2e-243 845.1 479 85.6
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 9.3e-243 843.6 576 74.8
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 8.2e-239 830.5 596 70.1
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 7.4e-232 807.4 546 72.3
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.2e-231 803.9 579 71.5
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.3e-228 796.6 463 83.4
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 5.0e-228 794.7 601 67.2
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 4.7e-226 788.1 596 67.6
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.9e-225 785.0 481 81.3
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.1e-222 776.9 532 72.0
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.8e-215 751.5 555 69.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 4.8e-215 751.5 559 70.5
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 7.3e-195 684.5 523 68.5
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 5.2e-193 678.3 405 83.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.8e-190 669.8 554 61.9
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.2e-166 589.3 554 59.2
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 3.2e-166 589.3 410 73.7
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 3.2e-166 589.3 341 85.6
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 5.1e-164 582.0 510 59.2
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 9.6e-163 577.8 356 80.9
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.0e-156 556.2 544 53.1
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.1e-134 484.6 601 46.6
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 6.0e-133 478.8 257 91.4
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.0e-95 355.1 251 72.1
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.4e-89 334.7 188 80.9
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.5e-75 288.1 411 45.5
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 4.1e-65 253.4 208 60.1
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 7.1e-57 226.1 198 57.6
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 2.3e-47 194.5 116 83.6
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 6.2e-45 186.4 153 65.4
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.5e-43 181.8 157 64.3
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 1.1e-38 165.6 102 79.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 2.8e-37 161.0 121 61.2
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 5.1e-31 140.2 314 32.2
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 2.6e-27 127.9 76 85.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 7.6e-27 126.3 312 32.7
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.1e-20 105.9 57 86.0
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 7.6e-19 99.8 58 82.8
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 6.1e-16 90.1 139 43.2
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 2.2e-13 81.6 126 42.1
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-12 79.0 107 45.8
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 4.1e-12 77.4 120 47.5
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 4.1e-12 77.4 45 71.1
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 2.6e-11 74.7 43 69.8
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.0e-10 72.8 42 81.0
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 4.2e-09 67.4 52 69.2
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 6.1e-08 63.5 36 77.8
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 1.4e-07 62.4 37 81.1
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 5.1e-07 60.5 55 56.4
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 1.5e-06 58.9 112 37.5


User provided reference genes

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