Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.1e-73 280.0 153 100.0
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 9.4e-46 187.2 145 64.1
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 1.0e-39 167.2 146 65.8
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 1.3e-39 166.8 146 59.6
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 3.8e-39 165.2 146 63.7
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 2.5e-38 162.5 146 63.7
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 7.3e-38 161.0 147 59.9
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 3.6e-37 158.7 145 57.2
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 4.7e-37 158.3 145 64.8
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 6.1e-37 157.9 149 55.7
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 1.0e-36 157.1 147 58.5
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 2.3e-36 156.0 145 56.6
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 3.0e-36 155.6 145 56.6
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 4.0e-36 155.2 148 54.7
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 4.0e-36 155.2 146 54.1
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 4.0e-36 155.2 148 54.7
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 5.2e-36 154.8 148 56.8
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.0e-35 152.9 145 55.2
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 2.0e-35 152.9 147 66.7
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 2.6e-35 152.5 146 56.2
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 3.4e-35 152.1 149 58.4
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 7.5e-35 151.0 146 52.7
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 9.8e-35 150.6 148 56.8
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 1.7e-34 149.8 149 53.7
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 3.7e-34 148.7 146 54.8
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 3.7e-34 148.7 150 60.7
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 3.7e-34 148.7 154 54.5
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 3.7e-34 148.7 151 53.6
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 4.9e-34 148.3 147 57.1
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 4.9e-34 148.3 147 59.2
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 6.4e-34 147.9 145 56.6
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 8.3e-34 147.5 145 53.8
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 8.3e-34 147.5 147 57.1
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 1.1e-33 147.1 145 53.8
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.4e-33 146.0 148 56.8
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 2.4e-33 146.0 151 55.6
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 3.2e-33 145.6 143 58.0
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 3.2e-33 145.6 148 64.2
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 5.4e-33 144.8 148 55.4
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 7.0e-33 144.4 148 52.7
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.2e-33 144.1 156 50.6
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 1.2e-32 143.7 151 57.0
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 2.7e-32 142.5 148 60.1
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 2.7e-32 142.5 145 54.5
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 3.5e-32 142.1 145 54.5
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.3e-31 140.2 167 55.7
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 1.7e-31 139.8 148 53.4
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 2.3e-31 139.4 145 52.4
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 2.3e-31 139.4 146 52.7
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 1.1e-30 137.1 145 52.4
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 1.9e-30 136.3 145 60.7
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 2.5e-30 136.0 150 52.0
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 9.5e-30 134.0 151 52.3
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 1.2e-29 133.7 149 51.0
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 3.6e-29 132.1 174 50.0
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 4.7e-29 131.7 157 52.9
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 4.7e-29 131.7 148 49.3
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 6.2e-29 131.3 148 57.4
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 1.0e-28 130.6 150 49.3
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 4.0e-28 128.6 139 54.0
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 4.0e-28 128.6 149 51.7
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 4.0e-28 128.6 127 60.6
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 1.5e-27 126.7 149 48.3
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 2.0e-27 126.3 148 49.3
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 5.8e-27 124.8 149 51.0
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.3e-26 123.6 148 48.6
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 4.9e-26 121.7 146 52.1
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 1.1e-25 120.6 153 44.4
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.1e-25 120.6 190 42.6
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 7.0e-25 117.9 155 59.4
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.2e-24 117.1 148 45.9
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.2e-24 117.1 147 53.7
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 6.0e-24 114.8 164 43.9
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.7e-23 113.2 146 49.3
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.3e-23 112.8 156 45.5
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 2.3e-23 112.8 175 40.0
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 3.0e-23 112.5 152 53.9
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.5e-22 110.2 145 52.4
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 4.3e-22 108.6 151 45.0
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.1e-20 104.0 151 43.7
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 8.9e-20 100.9 153 42.5
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 1.7e-18 96.7 149 46.3
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 9.5e-14 80.9 82 54.9
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 3.6e-13 79.0 156 39.1
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 1.9e-09 66.6 185 32.4
FvH4_2g00353 Fragaria vesca HOM05D006512 ORTHO05D008027 3.3e-06 55.8 56 48.2


User provided reference genes

Program Settings