Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-310 1068.1 531 100.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.0e-208 730.3 536 67.5
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 5.2e-200 701.4 535 66.5
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 3.1e-197 692.2 535 66.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.5e-194 683.3 539 63.3
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.6e-193 678.7 533 63.0
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-191 673.7 532 62.8
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-191 673.7 532 62.8
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.8e-191 670.6 530 61.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 9.8e-191 670.6 533 63.2
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.2e-190 669.5 541 61.6
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.2e-190 669.5 535 64.1
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 4.9e-190 668.3 539 63.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.3e-190 667.9 532 62.0
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.3e-190 667.9 532 62.0
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 6.3e-190 667.9 541 62.5
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 8.3e-190 667.5 537 62.6
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.8e-189 666.4 536 63.8
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.4e-189 666.0 528 61.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.4e-189 666.0 537 62.4
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.4e-189 666.0 534 62.9
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.1e-189 665.6 533 61.9
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.2e-188 663.7 545 60.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-188 663.7 537 61.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.0e-188 662.9 535 62.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 5.9e-188 661.4 539 60.3
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.3e-187 660.2 543 63.0
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.3e-187 659.4 543 61.5
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.8e-187 658.7 536 63.6
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.6e-187 657.9 535 63.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 8.6e-187 657.5 535 62.8
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-186 657.1 544 60.1
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-186 657.1 535 63.4
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-186 656.4 545 60.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 1.9e-186 656.4 533 63.8
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.5e-186 656.0 541 59.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.5e-186 656.0 541 59.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.3e-186 655.6 535 63.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-185 653.3 534 61.2
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.8e-185 652.5 543 60.2
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.7e-185 651.7 531 63.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 6.1e-185 651.4 529 62.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.0e-185 651.0 528 61.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-184 650.2 548 62.0
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.8e-184 649.8 534 60.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.0e-184 649.0 529 60.7
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 8.9e-184 647.5 538 61.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 8.9e-184 647.5 535 60.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 8.9e-184 647.5 532 60.9
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.5e-183 646.7 535 60.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.0e-183 646.4 531 59.7
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.0e-183 646.4 534 62.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 3.4e-183 645.6 543 60.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 7.5e-183 644.4 537 60.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.7e-182 643.3 535 61.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.2e-182 642.9 536 61.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-182 642.1 558 58.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 8.3e-182 641.0 558 58.4
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.8e-181 639.8 539 59.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 5.4e-181 638.3 539 59.2
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.0e-179 634.0 495 62.4
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 3.0e-179 632.5 530 60.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.0e-179 631.7 525 58.5
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.9e-178 629.8 528 61.2
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.9e-178 629.8 456 68.9
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 3.3e-178 629.0 562 58.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.2e-177 627.1 530 60.0
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.9e-176 620.9 532 57.9
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.2e-175 620.5 532 58.5
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.2e-175 620.5 534 58.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-175 620.2 532 57.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.7e-174 616.7 571 56.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.2e-174 616.3 550 57.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.9e-174 615.9 559 56.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.9e-174 615.1 460 64.8
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 4.9e-174 615.1 478 63.8
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 6.4e-174 614.8 535 56.3
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 6.4e-174 614.8 540 57.8
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 6.4e-174 614.8 530 58.5
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.0e-173 611.3 560 56.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 7.0e-173 611.3 551 57.2
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 9.2e-173 610.9 548 56.9
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.2e-173 610.9 534 58.4
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.6e-172 610.1 459 64.3
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.6e-172 608.6 561 56.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 4.6e-172 608.6 556 56.3
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 6.0e-172 608.2 550 57.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.0e-172 608.2 543 57.1
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.5e-170 602.8 467 63.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 9.5e-170 600.9 537 57.5
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.8e-169 599.4 548 56.0
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 4.0e-168 595.5 536 56.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.2e-168 595.1 563 54.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.4e-167 592.4 549 54.3
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.7e-166 590.1 526 56.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.2e-165 584.3 471 61.6
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 4.6e-164 582.0 459 62.7
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.3e-163 580.5 458 59.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.1e-162 577.4 454 61.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.1e-162 577.4 458 62.2
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.5e-162 576.2 530 57.4
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.2e-161 573.9 533 55.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.6e-161 573.5 465 60.6
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.8e-160 570.1 395 70.4
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 6.8e-160 568.2 546 54.8
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.1e-157 560.8 409 66.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.2e-157 559.3 458 59.6
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.6e-153 545.8 490 56.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 4.6e-148 528.9 452 58.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 8.7e-147 524.6 434 58.3
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.2e-143 514.2 439 57.9
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.0e-143 513.5 385 64.7
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 4.9e-142 508.8 311 75.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.4e-136 490.0 290 78.6
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 4.0e-136 489.2 429 57.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 6.0e-132 475.3 311 69.1
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 9.6e-130 468.0 306 72.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 8.1e-129 464.9 311 68.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 8.5e-118 428.3 385 56.9
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 5.5e-117 425.6 458 47.2
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.2e-113 413.7 288 66.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 6.9e-112 408.7 472 43.0
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.5e-106 391.0 254 73.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 4.4e-106 389.4 413 48.2
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.3e-105 387.9 238 77.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-103 380.9 239 74.5
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.2e-85 320.1 407 46.7
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 8.0e-84 315.5 199 75.4
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.0e-75 288.5 340 46.8
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.2e-74 285.0 267 54.3
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 7.5e-74 282.3 196 66.8
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.1e-68 264.2 213 60.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.8e-68 263.8 166 76.5
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-65 254.2 273 51.6
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-52 211.5 157 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 6.4e-49 199.5 189 51.3
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 4.6e-47 193.4 129 65.1
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 4.6e-47 193.4 129 65.1
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.9e-46 190.3 196 50.5
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-45 188.3 196 50.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-45 187.2 124 65.3
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-44 183.7 411 28.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 8.1e-44 182.6 240 45.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.1e-40 169.5 109 74.3
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 5.2e-35 153.3 164 47.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 5.8e-34 149.8 106 60.4
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.1e-32 145.6 159 47.8
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.1e-30 136.7 169 43.8
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 7.3e-29 132.9 236 35.2
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.1e-28 131.3 98 67.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 8.1e-28 129.4 183 42.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-27 129.0 160 45.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.0e-26 124.8 214 36.4
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 5.4e-24 116.7 167 45.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 7.1e-24 116.3 76 65.8
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 7.1e-24 116.3 76 65.8
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.7e-23 114.4 216 34.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 4.6e-23 113.6 85 58.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.9e-22 110.5 95 56.8
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.7e-20 104.0 108 50.9
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 2.6e-18 97.8 71 69.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 6.7e-14 83.2 59 61.0
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 2.0e-10 71.6 93 44.1
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.5e-07 60.8 35 82.9


User provided reference genes

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