Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.1e-61 237.3 117 100.0
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.8e-20 100.9 63 79.4
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 3.7e-18 95.1 76 61.8
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 1.9e-17 92.8 127 47.2
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.9e-17 92.8 78 57.7
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 2.4e-17 92.4 76 65.8
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 3.2e-17 92.0 127 46.5
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 5.4e-17 91.3 76 60.5
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 5.4e-17 91.3 76 59.2
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 5.4e-17 91.3 105 50.5
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 7.0e-17 90.9 76 60.5
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 1.6e-16 89.7 76 59.2
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 2.7e-16 89.0 76 60.5
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 2.7e-16 89.0 78 60.3
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 7.8e-16 87.4 104 51.0
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 1.7e-15 86.3 122 46.7
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 5.1e-15 84.7 76 53.9
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 6.6e-15 84.3 63 66.7
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 8.6e-15 84.0 122 47.5
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.6e-15 84.0 70 67.1
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 1.1e-14 83.6 107 49.5
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.5e-14 83.2 63 69.8
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.5e-14 83.2 77 62.3
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 2.5e-14 82.4 64 64.1
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 3.3e-14 82.0 67 62.7
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 4.3e-14 81.6 89 48.3
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 5.6e-14 81.3 120 45.8
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 5.6e-14 81.3 75 57.3
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 7.3e-14 80.9 121 44.6
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 7.3e-14 80.9 120 45.0
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 9.5e-14 80.5 68 64.7
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 1.2e-13 80.1 121 43.8
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 1.2e-13 80.1 55 70.9
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 1.6e-13 79.7 76 55.3
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 1.6e-13 79.7 122 45.9
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.1e-13 79.3 42 92.9
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 2.1e-13 79.3 60 68.3
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.1e-13 79.3 78 64.1
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 2.8e-13 79.0 61 68.9
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 3.6e-13 78.6 62 64.5
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 3.6e-13 78.6 76 57.9
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 3.6e-13 78.6 122 42.6
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 4.7e-13 78.2 79 58.2
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 4.7e-13 78.2 51 76.5
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 4.7e-13 78.2 74 59.5
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 4.7e-13 78.2 61 65.6
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 4.7e-13 78.2 61 65.6
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 4.7e-13 78.2 82 54.9
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 6.2e-13 77.8 104 48.1
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 6.2e-13 77.8 77 58.4
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 8.1e-13 77.4 109 45.0
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 8.1e-13 77.4 78 52.6
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 1.1e-12 77.0 77 57.1
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 1.4e-12 76.6 81 53.1
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 1.8e-12 76.3 64 59.4
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 2.3e-12 75.9 62 59.7
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 2.3e-12 75.9 69 62.3
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 2.3e-12 75.9 69 62.3
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 2.3e-12 75.9 69 62.3
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 2.3e-12 75.9 69 62.3
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 2.3e-12 75.9 78 51.3
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 2.3e-12 75.9 69 59.4
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 2.3e-12 75.9 122 42.6
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 2.3e-12 75.9 118 39.8
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 4.0e-12 75.1 69 62.3
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.0e-12 75.1 121 43.8
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 6.8e-12 74.3 76 52.6
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 8.9e-12 73.9 68 57.4
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 8.9e-12 73.9 51 70.6
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 1.2e-11 73.6 68 58.8
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 1.2e-11 73.6 65 58.5
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.2e-11 73.6 61 62.3
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 1.5e-11 73.2 52 63.5
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 1.5e-11 73.2 89 47.2
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 2.0e-11 72.8 63 60.3
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.6e-11 72.4 104 44.2
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 4.4e-11 71.6 55 65.5
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 5.8e-11 71.2 68 54.4
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 5.8e-11 71.2 65 56.9
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 5.8e-11 71.2 71 53.5
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 7.5e-11 70.9 74 54.1
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 7.5e-11 70.9 76 52.6
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 9.9e-11 70.5 56 62.5
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 9.9e-11 70.5 78 48.7
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.3e-10 70.1 67 56.7
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.7e-10 69.7 52 63.5
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 2.9e-10 68.9 62 58.1
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 3.7e-10 68.6 99 40.4
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 6.4e-10 67.8 74 51.4
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 8.3e-10 67.4 56 58.9
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 8.3e-10 67.4 56 58.9
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 1.4e-09 66.6 102 44.1
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 1.4e-09 66.6 62 59.7
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 1.9e-09 66.2 56 64.3
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 2.4e-09 65.9 105 42.9
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 3.2e-09 65.5 120 38.3
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 3.2e-09 65.5 70 52.9
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 4.1e-09 65.1 51 56.9
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 5.4e-09 64.7 56 58.9
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 7.1e-09 64.3 56 60.7
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.6e-08 63.2 63 58.7
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 7.8e-08 60.8 96 44.8
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 1.1e-06 57.0 71 47.9


User provided reference genes

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