Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.7e-46 188.3 97 100.0
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.3e-37 158.7 115 77.4
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.3e-37 158.7 115 77.4
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.5e-36 156.0 115 75.7
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 1.9e-36 155.6 115 72.2
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.8e-35 151.8 116 74.1
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.8e-35 151.8 102 81.4
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 6.2e-35 150.6 115 71.3
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 8.1e-35 150.2 115 70.4
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 1.4e-34 149.4 115 70.4
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.8e-34 149.1 102 80.4
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.1e-34 148.3 115 69.6
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 3.1e-34 148.3 115 70.4
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 4.0e-34 147.9 115 69.6
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 5.3e-34 147.5 115 71.3
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 9.0e-34 146.7 115 69.6
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 9.0e-34 146.7 115 69.6
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 1.2e-33 146.4 115 68.7
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.5e-33 146.0 115 67.8
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 2.6e-33 145.2 115 68.7
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 3.4e-33 144.8 115 67.8
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 3.4e-33 144.8 115 69.6
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 3.4e-33 144.8 115 69.6
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 3.4e-33 144.8 115 68.7
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.4e-33 144.8 115 67.0
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.5e-33 144.4 102 78.4
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 5.8e-33 144.1 115 67.8
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 7.6e-33 143.7 115 67.8
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.6e-33 143.7 115 67.8
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.6e-33 143.7 115 67.8
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 7.6e-33 143.7 114 67.5
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 7.6e-33 143.7 115 67.8
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 7.6e-33 143.7 115 68.7
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 9.9e-33 143.3 115 67.0
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.9e-33 143.3 115 67.0
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 9.9e-33 143.3 115 68.7
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.3e-32 142.9 115 67.0
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.7e-32 142.5 115 67.0
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 2.2e-32 142.1 115 67.8
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 3.8e-32 141.4 115 67.8
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 3.8e-32 141.4 119 66.4
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 3.8e-32 141.4 114 64.0
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 4.9e-32 141.0 115 67.0
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 4.9e-32 141.0 115 67.8
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 4.9e-32 141.0 115 67.8
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 8.4e-32 140.2 115 66.1
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 8.4e-32 140.2 108 70.4
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 8.4e-32 140.2 115 65.2
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 66.1
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 66.1
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 1.1e-31 139.8 115 66.1
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 1.4e-31 139.4 115 64.3
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 1.9e-31 139.0 115 64.3
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 1.9e-31 139.0 115 64.3
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 1.9e-31 139.0 115 64.3
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 1.9e-31 139.0 115 64.3
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 1.9e-31 139.0 115 63.5
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 64.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 65.2
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 65.2
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 66.1
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 2.4e-31 138.7 115 64.3
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 3.2e-31 138.3 115 63.5
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 3.2e-31 138.3 115 66.1
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 3.2e-31 138.3 116 67.2
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 3.2e-31 138.3 115 66.1
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 3.2e-31 138.3 115 67.0
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 4.2e-31 137.9 115 66.1
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 4.2e-31 137.9 115 67.8
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 4.2e-31 137.9 115 63.5
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 5.4e-31 137.5 115 67.0
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 5.4e-31 137.5 117 62.4
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 7.1e-31 137.1 115 64.3
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 7.1e-31 137.1 115 62.6
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 9.3e-31 136.7 115 63.5
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.3e-31 136.7 115 64.3
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 9.3e-31 136.7 115 64.3
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 9.3e-31 136.7 115 63.5
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 1.2e-30 136.3 115 62.6
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.2e-30 136.3 110 67.3
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 1.6e-30 136.0 115 62.6
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.6e-30 136.0 114 66.7
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.6e-30 136.0 108 67.6
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.6e-30 136.0 115 62.6
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 2.1e-30 135.6 115 66.1
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 2.1e-30 135.6 115 64.3
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 2.1e-30 135.6 115 63.5
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 2.1e-30 135.6 115 62.6
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 2.1e-30 135.6 115 65.2
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 2.7e-30 135.2 115 63.5
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 2.7e-30 135.2 115 63.5
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 3.5e-30 134.8 119 60.5
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 3.5e-30 134.8 115 61.7
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 3.5e-30 134.8 115 65.2
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 6.0e-30 134.0 115 64.3
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 6.0e-30 134.0 119 62.2
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 7.9e-30 133.7 115 63.5
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 7.9e-30 133.7 115 63.5
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 7.9e-30 133.7 115 61.7
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.0e-29 133.3 115 64.3
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 1.0e-29 133.3 115 63.5
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 1.0e-29 133.3 115 63.5
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.3e-29 132.9 97 74.2
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 1.8e-29 132.5 115 62.6
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 2.3e-29 132.1 115 61.7
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 2.3e-29 132.1 103 66.0
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.3e-29 132.1 115 59.1
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 2.3e-29 132.1 115 62.6
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 3.9e-29 131.3 115 66.1
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 5.1e-29 131.0 115 63.5
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 5.1e-29 131.0 116 63.8
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 5.1e-29 131.0 119 59.7
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 6.7e-29 130.6 115 63.5
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 1.1e-28 129.8 115 59.1
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 1.1e-28 129.8 115 61.7
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 1.5e-28 129.4 115 60.9
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 5.6e-28 127.5 119 54.6
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 7.4e-28 127.1 119 54.6
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 7.4e-28 127.1 119 53.8
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 9.6e-28 126.7 119 55.5
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 9.6e-28 126.7 106 66.0
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 9.6e-28 126.7 119 57.1
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 9.6e-28 126.7 119 57.1
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 1.3e-27 126.3 115 60.0
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 1.3e-27 126.3 98 71.4
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 1.6e-27 125.9 119 58.0
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 1.6e-27 125.9 119 55.5
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 4.8e-27 124.4 119 52.9
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 4.8e-27 124.4 119 53.8
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 4.8e-27 124.4 113 61.1
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 6.2e-27 124.0 119 52.9
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.1e-26 123.2 118 53.4
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.1e-26 123.2 119 55.5
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.8e-26 122.5 115 60.0
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 4.0e-26 121.3 120 57.5
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 5.3e-26 120.9 119 56.3
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 9.0e-26 120.2 119 57.1
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.6e-25 118.6 112 53.6
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 3.8e-24 114.8 115 55.7
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 8.4e-24 113.6 119 48.7
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 1.1e-23 113.2 93 67.7
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 1.1e-23 113.2 93 67.7
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 9.3e-23 110.2 96 63.5
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 2.7e-22 108.6 97 60.8
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 2.7e-22 108.6 91 64.8
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 3.5e-22 108.2 93 63.4
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 3.5e-22 108.2 93 66.7
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.9e-22 107.1 99 58.6
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.3e-21 106.3 92 68.5
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 3.9e-21 104.8 92 60.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 6.7e-21 104.0 90 62.2
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 1.3e-19 99.8 97 53.6
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 2.1e-19 99.0 105 51.4
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 3.7e-19 98.2 97 56.7
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.1e-18 96.7 86 61.6
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 1.4e-18 96.3 93 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 4.5e-17 91.3 110 46.4
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 7.6e-17 90.5 77 64.9
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.7e-16 89.4 82 62.2
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 4.9e-16 87.8 97 53.6
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.3e-15 83.6 78 60.3
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 1.6e-14 82.8 90 53.3
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 3.5e-14 81.6 103 49.5
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 1.0e-13 80.1 105 39.0
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.8e-13 79.3 78 57.7
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 5.1e-13 77.8 52 76.9
HanXRQChr08g0232101 Helianthus annuus HOM05D004009 ORTHO05D004617 1.1e-12 76.6 48 79.2
Potri.005G068300 Populus trichocarpa HOM05D004009 ORTHO05D004617 7.4e-12 73.9 52 71.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.3e-11 73.2 76 51.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-11 73.2 76 51.3
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 3.1e-10 68.6 47 66.0
CAN.G504.96 Capsicum annuum HOM05D004009 ORTHO05D004617 2.0e-09 65.9 82 48.8
Medtr5g023360 Medicago truncatula HOM05D004009 ORTHO05D004617 5.5e-07 57.8 48 64.6
FAN01G0626 Fragaria x ananassa HOM05D004009 ORTHO05D004617 6.1e-06 54.3 49 55.1
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 7.9e-06 53.9 94 37.2


User provided reference genes

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