Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.2e-54 214.9 114 100.0
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.8e-41 172.6 114 82.5
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.8e-41 172.6 114 82.5
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.2e-40 169.9 115 80.9
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 2.0e-40 169.1 114 78.1
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 5.8e-40 167.5 114 79.8
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 1.3e-39 166.4 114 76.3
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 4.9e-39 164.5 114 76.3
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 1.9e-38 162.5 114 74.6
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 1.9e-38 162.5 114 77.2
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 5.4e-38 161.0 114 76.3
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 5.4e-38 161.0 114 77.2
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 1.2e-37 159.8 114 73.7
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 2.1e-37 159.1 114 71.9
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 2.7e-37 158.7 114 72.8
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.7e-37 158.7 109 77.1
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 3.5e-37 158.3 114 73.7
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 4.6e-37 157.9 114 75.4
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 6.0e-37 157.5 114 73.7
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 7.8e-37 157.1 114 73.7
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 1.0e-36 156.8 114 74.6
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 1.0e-36 156.8 114 71.9
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 1.3e-36 156.4 114 73.7
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.3e-36 156.4 114 71.9
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 1.7e-36 156.0 114 72.8
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 2.3e-36 155.6 114 73.7
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 3.0e-36 155.2 114 72.8
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 3.0e-36 155.2 114 72.8
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 3.0e-36 155.2 114 73.7
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.0e-36 155.2 114 73.7
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.0e-36 155.2 114 73.7
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 3.0e-36 155.2 114 73.7
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 3.9e-36 154.8 114 71.9
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 5.1e-36 154.5 114 73.7
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 5.1e-36 154.5 114 73.7
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 6.6e-36 154.1 114 71.1
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 6.6e-36 154.1 114 70.2
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 6.6e-36 154.1 114 72.8
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 8.6e-36 153.7 114 71.1
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 1.1e-35 153.3 114 70.2
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.1e-35 153.3 114 71.1
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 1.5e-35 152.9 114 72.8
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 1.9e-35 152.5 114 70.2
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 1.9e-35 152.5 114 69.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.5e-35 152.1 114 69.3
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.5e-35 152.1 114 69.3
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 3.3e-35 151.8 114 72.8
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 4.3e-35 151.4 114 71.9
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 4.3e-35 151.4 115 73.9
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 5.6e-35 151.0 114 70.2
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 5.6e-35 151.0 114 69.3
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 5.6e-35 151.0 114 71.1
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 7.3e-35 150.6 114 71.1
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 7.3e-35 150.6 114 69.3
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 9.5e-35 150.2 114 71.1
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 1.2e-34 149.8 118 71.2
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 1.2e-34 149.8 114 71.1
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 1.2e-34 149.8 114 70.2
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 1.6e-34 149.4 114 69.3
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 1.6e-34 149.4 114 68.4
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 2.8e-34 148.7 114 71.9
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 3.6e-34 148.3 114 69.3
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 3.6e-34 148.3 114 68.4
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.6e-34 148.3 114 70.2
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 4.7e-34 147.9 114 69.3
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 4.7e-34 147.9 114 67.5
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.7e-34 147.9 114 72.8
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 4.7e-34 147.9 110 72.7
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 4.7e-34 147.9 114 67.5
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 4.7e-34 147.9 114 68.4
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 6.2e-34 147.5 114 67.5
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 6.2e-34 147.5 110 70.9
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.1e-33 146.7 114 67.5
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.4e-33 146.4 114 69.3
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 1.4e-33 146.4 114 65.8
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.4e-33 146.4 114 67.5
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.8e-33 146.0 114 69.3
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 1.8e-33 146.0 114 67.5
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 1.8e-33 146.0 114 66.7
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 1.8e-33 146.0 114 66.7
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 2.3e-33 145.6 114 65.8
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 2.3e-33 145.6 114 68.4
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 3.1e-33 145.2 114 66.7
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 3.1e-33 145.2 108 71.3
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 3.1e-33 145.2 114 68.4
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 4.0e-33 144.8 114 67.5
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 4.0e-33 144.8 114 67.5
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 5.2e-33 144.4 114 66.7
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 5.2e-33 144.4 114 68.4
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 68.4
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 66.7
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 65.8
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 65.8
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 65.8
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 65.8
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 6.8e-33 144.1 114 64.9
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 8.9e-33 143.7 114 68.4
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 8.9e-33 143.7 114 65.8
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 8.9e-33 143.7 114 65.8
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 8.9e-33 143.7 110 70.9
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 8.9e-33 143.7 114 67.5
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.2e-32 143.3 114 71.1
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 1.5e-32 142.9 114 65.8
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 2.0e-32 142.5 116 64.7
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 2.6e-32 142.1 114 67.5
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 3.4e-32 141.7 115 67.0
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 3.4e-32 141.7 118 66.9
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 5.8e-32 141.0 114 62.3
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 7.6e-32 140.6 118 64.4
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 9.9e-32 140.2 114 65.8
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 9.9e-32 140.2 106 71.7
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 9.9e-32 140.2 98 76.5
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 4.9e-31 137.9 114 62.3
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 6.4e-31 137.5 115 66.1
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.1e-30 136.7 114 68.4
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 1.4e-30 136.3 118 63.6
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.4e-30 136.3 114 69.3
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 1.9e-30 136.0 113 62.8
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 5.4e-30 134.4 118 61.9
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 5.4e-30 134.4 118 61.9
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 7.1e-30 134.0 118 59.3
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.1e-30 134.0 114 66.7
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 9.2e-30 133.7 118 61.0
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 1.6e-29 132.9 119 63.9
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 1.6e-29 132.9 118 58.5
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.1e-29 132.5 92 76.1
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 2.1e-29 132.5 118 57.6
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 2.1e-29 132.5 118 62.7
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 3.5e-29 131.7 118 57.6
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 3.5e-29 131.7 118 58.5
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 3.5e-29 131.7 118 61.9
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 4.6e-29 131.3 114 62.3
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 6.0e-29 131.0 118 61.9
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 7.8e-29 130.6 118 58.5
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 7.8e-29 130.6 118 58.5
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 1.3e-28 129.8 114 62.3
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 5.1e-28 127.9 114 62.3
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 5.1e-28 127.9 118 57.6
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 9.6e-27 123.6 92 76.1
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 9.6e-27 123.6 92 76.1
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 2.8e-26 122.1 118 54.2
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 8.1e-26 120.6 95 67.4
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 8.1e-26 120.6 99 65.7
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 8.1e-26 120.6 114 56.1
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 1.1e-25 120.2 92 76.1
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.8e-25 119.4 108 58.3
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 1.5e-24 116.3 97 61.9
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 1.5e-24 116.3 91 70.3
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 2.6e-24 115.5 87 72.4
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 9.9e-24 113.6 92 68.5
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 3.8e-23 111.7 90 66.7
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 3.8e-23 111.7 90 66.7
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 4.6e-21 104.8 96 60.4
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.3e-20 103.2 81 72.8
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 3.9e-20 101.7 96 61.5
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 5.1e-20 101.3 104 51.9
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 6.6e-20 100.9 77 71.4
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 9.6e-19 97.1 92 57.6
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.6e-18 96.3 74 73.0
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.4e-17 92.4 78 66.7
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 3.1e-17 92.0 89 62.9
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 5.3e-17 91.3 103 57.3
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 3.4e-16 88.6 111 49.5
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 1.1e-14 83.6 104 41.3
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 5.4e-14 81.3 58 81.0
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-13 80.1 77 59.7
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-13 80.1 77 59.7
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 7.9e-13 77.4 114 47.4
Potri.005G068300 Populus trichocarpa HOM05D004009 ORTHO05D004617 1.8e-12 76.3 60 60.0
HanXRQChr08g0232101 Helianthus annuus HOM05D004009 ORTHO05D004617 4.3e-11 71.6 54 64.8
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.3e-10 70.1 52 73.1
CAN.G504.96 Capsicum annuum HOM05D004009 ORTHO05D004617 1.6e-10 69.7 87 52.9
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 8.4e-07 57.4 96 42.7
Carub.0003s2016 Capsella rubella HOM05D001606 ORTHO05D002266 4.2e-06 55.1 97 30.9
Mapoly0056s0039 Marchantia polymorpha HOM05D001606 ORTHO05D002266 4.2e-06 55.1 97 30.9
Medtr5g023360 Medicago truncatula HOM05D004009 ORTHO05D004617 4.2e-06 55.1 45 57.8
GSVIVG01026787001 Vitis vinifera HOM05D001606 ORTHO05D002266 7.1e-06 54.3 97 27.8
AL3G33930 Arabidopsis lyrata HOM05D001606 ORTHO05D002266 9.3e-06 53.9 97 29.9
AT3G20230 Arabidopsis thaliana HOM05D001606 ORTHO05D002266 9.3e-06 53.9 97 29.9
A05p28750 Brassica napus HOM05D001606 ORTHO05D002266 9.3e-06 53.9 97 29.9
C05p44160 Brassica napus HOM05D001606 ORTHO05D002266 9.3e-06 53.9 97 29.9
BolC5t33138H Brassica oleracea HOM05D001606 ORTHO05D002266 9.3e-06 53.9 97 29.9
BraA05t21752Z Brassica rapa HOM05D001606 ORTHO05D002266 9.3e-06 53.9 97 29.9


User provided reference genes

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