Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 0.0e+00 1127.5 559 100.0
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 4.5e-279 964.1 557 83.7
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 7.7e-279 963.4 558 82.8
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.1e-277 959.5 559 83.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 5.7e-274 947.2 555 82.5
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.7e-274 946.4 559 82.5
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.8e-273 944.9 559 82.1
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 1.1e-272 943.0 556 80.6
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.1e-272 943.0 557 81.7
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.4e-272 942.6 559 81.9
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 7.0e-272 940.3 557 81.9
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 9.1e-272 939.9 557 80.6
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.7e-270 935.6 557 80.4
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.2e-270 935.3 555 81.6
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 6.5e-270 933.7 559 79.4
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.9e-269 932.2 559 80.5
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 4.2e-269 931.0 559 80.3
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.5e-269 930.6 559 79.6
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 9.4e-269 929.9 541 82.4
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.2e-268 929.5 560 80.0
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.2e-268 929.5 557 79.9
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 4.7e-268 927.5 560 79.8
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 6.7e-267 923.7 557 80.1
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.5e-266 922.5 557 78.8
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.6e-266 921.8 557 79.0
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 9.7e-266 919.8 557 79.7
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.3e-265 919.5 565 78.6
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-265 919.5 559 79.6
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.8e-265 918.3 557 81.1
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.8e-265 918.3 557 78.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 4.8e-265 917.5 552 79.3
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 4.8e-265 917.5 557 79.0
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.4e-264 916.0 557 77.4
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.4e-264 915.2 557 79.7
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 3.1e-264 914.8 558 78.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 4.1e-264 914.4 557 79.2
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 2.0e-263 912.1 557 79.0
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 3.8e-262 907.9 557 79.0
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 5.0e-262 907.5 557 77.7
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 2.5e-261 905.2 557 78.8
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 3.2e-261 904.8 557 77.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.2e-261 904.4 557 78.8
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 5.5e-261 904.0 555 77.7
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 7.2e-261 903.7 552 78.1
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 9.4e-261 903.3 557 77.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.2e-260 902.9 576 76.9
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 2.1e-260 902.1 557 77.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 3.6e-260 901.4 554 77.6
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 6.1e-260 900.6 558 78.1
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.4e-259 899.4 558 77.4
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 4.0e-259 897.9 557 77.0
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 5.2e-259 897.5 559 77.3
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.2e-258 896.3 558 77.2
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.2e-258 896.3 558 76.9
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.3e-257 892.9 558 76.9
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 8.3e-257 890.2 574 75.3
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.1e-256 889.8 560 76.8
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.1e-256 887.9 558 76.7
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 5.4e-256 887.5 527 81.6
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.0e-255 885.6 559 77.1
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.0e-255 885.6 559 75.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.0e-254 883.2 559 76.7
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.5e-254 880.6 559 76.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.5e-254 880.6 559 76.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.5e-254 880.6 559 76.2
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.9e-253 879.0 557 75.8
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-253 879.0 557 75.9
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.6e-252 875.9 557 74.9
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 6.1e-252 874.0 557 74.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 6.1e-252 874.0 560 75.4
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.0e-251 873.2 586 72.4
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 5.2e-251 870.9 537 77.8
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 8.9e-251 870.2 559 75.1
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.6e-250 868.6 575 72.7
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 7.5e-250 867.1 557 74.7
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 3.7e-249 864.8 560 75.4
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.9e-249 864.4 560 75.0
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 6.3e-249 864.0 559 75.0
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.4e-248 862.8 559 74.6
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.4e-248 862.8 602 72.6
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 1.8e-248 862.4 559 74.6
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 3.1e-248 861.7 559 74.2
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 5.4e-248 860.9 564 74.8
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 3.5e-247 858.2 558 74.6
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 7.8e-247 857.1 542 75.1
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.7e-246 855.9 561 76.8
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.7e-246 855.9 558 74.2
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 3.8e-246 854.7 565 74.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 5.0e-246 854.4 556 74.6
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 5.0e-246 854.4 556 74.5
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 8.6e-246 853.6 556 74.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.5e-245 852.8 565 74.0
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.5e-245 852.0 577 72.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.1e-244 849.0 552 73.9
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 5.2e-243 844.3 557 74.7
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 6.8e-243 844.0 531 76.8
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.2e-242 843.2 572 72.9
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 2.9e-241 838.6 559 71.7
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.8e-240 835.9 551 71.9
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.4e-240 835.5 538 74.7
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 3.2e-240 835.1 514 77.8
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 6.0e-239 830.9 558 72.4
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.1e-237 826.6 554 72.9
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.9e-237 825.9 554 73.3
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 2.1e-236 822.4 546 72.5
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.3e-235 818.9 602 67.9
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 8.9e-235 817.0 563 72.5
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 2.6e-234 815.5 490 79.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 4.9e-233 811.2 540 73.0
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 2.4e-232 808.9 565 70.6
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 4.3e-229 798.1 488 77.0
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.1e-228 795.8 557 68.8
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 8.1e-228 793.9 559 71.0
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.1e-224 780.8 560 68.6
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.0e-222 775.4 545 71.2
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.3e-221 771.5 559 66.7
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.4e-218 761.9 442 81.2
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.2e-216 755.4 545 69.9
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.7e-207 725.7 548 62.8
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.2e-200 702.2 563 62.3
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.8e-188 661.8 433 74.6
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.4e-187 659.4 545 59.4
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.9e-184 649.8 554 55.8
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 7.9e-183 644.4 391 78.5
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.5e-181 639.4 391 78.3
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 7.4e-173 611.3 514 59.7
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 9.7e-173 610.9 391 75.4
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 9.1e-171 604.4 549 54.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.4e-160 570.5 490 55.5
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 9.4e-160 567.8 322 84.5
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 9.8e-141 504.6 292 81.2
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 2.7e-138 496.5 308 78.2
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.3e-137 493.4 322 73.0
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.9e-136 490.3 339 70.2
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 5.0e-129 465.7 321 68.8
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.0e-122 442.2 292 73.3
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 2.3e-118 430.3 268 77.2
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 4.7e-111 406.0 273 71.1
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-103 380.2 246 74.8
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 5.8e-101 372.5 238 77.7
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.3e-97 361.3 235 74.5
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 4.2e-91 339.7 240 70.4
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.7e-82 310.5 267 59.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.0e-56 224.6 138 78.3
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.3e-56 223.8 139 77.7
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.7e-56 222.2 137 78.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.2e-55 219.2 139 76.3
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 3.8e-52 210.3 180 60.0
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-50 205.3 128 78.1
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 4.7e-50 203.4 140 71.4
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 2.4e-38 164.5 98 80.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.3e-36 158.7 116 68.1
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 2.1e-26 124.8 106 58.5
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.0e-22 109.8 68 76.5
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.0e-21 108.2 68 75.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.5e-19 102.1 63 74.6
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.5e-19 101.3 63 73.0
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 9.5e-19 99.4 63 71.4
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-18 99.0 71 63.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.8e-17 95.1 491 25.1
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 8.9e-17 92.8 245 27.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 8.9e-17 92.8 62 72.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.5e-16 92.0 57 71.9
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.3e-15 89.0 531 25.6
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 2.2e-15 88.2 494 24.9
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 8.6e-12 76.3 54 68.5
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 4.7e-10 70.5 54 55.6
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 1.7e-07 62.0 49 59.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.7e-07 62.0 49 59.2
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 3.7e-07 60.8 64 59.4


User provided reference genes

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