Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00405 Eucalyptus grandis HOM05D007577 ORTHO05D002366 3.5e-149 531.6 259 100.0
PGR042G1402 Punica granatum HOM05D007577 ORTHO05D002366 5.5e-38 162.2 207 47.8
Duzib041G0196 Durio zibethinus HOM05D007577 ORTHO05D002366 3.6e-37 159.5 195 52.3
Thecc.08G067500 Theobroma cacao HOM05D007577 ORTHO05D002366 3.6e-37 159.5 194 51.5
Manes.02G147100 Manihot esculenta HOM05D007577 ORTHO05D002366 1.4e-36 157.5 202 51.0
QL09p017111 Quercus lobata HOM05D007577 ORTHO05D002366 1.5e-35 154.1 206 47.1
COL.COLO4_35193 Corchorus olitorius HOM05D007577 ORTHO05D002366 7.4e-35 151.8 215 46.5
Potri.005G158400 Populus trichocarpa HOM05D007577 ORTHO05D002366 7.4e-35 151.8 185 51.4
vmacro21310 Vaccinium macrocarpon HOM05D007577 ORTHO05D002366 7.4e-35 151.8 202 46.0
Sabra05G0120900 Salix brachista HOM05D007577 ORTHO05D002366 9.7e-35 151.4 184 51.6
Manes.18G061400 Manihot esculenta HOM05D007577 ORTHO05D002366 1.7e-34 150.6 199 49.7
Haze_22347 Corylus avellana HOM05D007577 ORTHO05D002366 3.7e-34 149.4 198 47.5
PGR031G3996 Punica granatum HOM05D007577 ORTHO05D002366 3.7e-34 149.4 182 47.8
Peaxi162Scf00281g00079 Petunia axillaris HOM05D007577 ORTHO05D002366 1.1e-33 147.9 181 49.7
Actinidia10365 Actinidia chinensis HOM05D007577 ORTHO05D002366 3.1e-33 146.4 191 49.2
Lalb_Chr04g0253001 Lupinus albus HOM05D007577 ORTHO05D002366 5.3e-33 145.6 183 48.1
MBI06_g18795_MAGBIO Magnolia biondii HOM05D007577 ORTHO05D002366 2.6e-32 143.3 190 47.9
Phvul.008G179400 Phaseolus vulgaris HOM05D007577 ORTHO05D002366 4.5e-32 142.5 217 45.6
Gohir.A05G221500 Gossypium hirsutum HOM05D007577 ORTHO05D002366 7.7e-32 141.7 180 48.3
Nitab4.5_0001507g0070 Nicotiana tabacum HOM05D007577 ORTHO05D002366 7.7e-32 141.7 187 46.0
LjContig00408g0001347 Lotus japonicus HOM05D007577 ORTHO05D002366 2.2e-31 140.2 198 45.5
Solyc04g076010.3 Solanum lycopersicum HOM05D007577 ORTHO05D002366 2.2e-31 140.2 189 45.5
Duzib093G2023 Durio zibethinus HOM05D007577 ORTHO05D002366 2.9e-31 139.8 197 48.7
FvH4_5g35850 Fragaria vesca HOM05D007577 ORTHO05D002366 3.8e-31 139.4 208 44.7
Gohir.D05G224200 Gossypium hirsutum HOM05D007577 ORTHO05D002366 3.8e-31 139.4 191 46.1
FAN04G3208 Fragaria x ananassa HOM05D007577 ORTHO05D002366 6.5e-31 138.7 209 43.1
FAN08G0887 Fragaria x ananassa HOM05D007577 ORTHO05D002366 6.5e-31 138.7 208 44.2
Cc10_g15550 Coffea canephora HOM05D007577 ORTHO05D002366 8.5e-31 138.3 218 39.4
FAN18G2443 Fragaria x ananassa HOM05D007577 ORTHO05D002366 8.5e-31 138.3 208 44.2
Lalb_Chr10g0102661 Lupinus albus HOM05D007577 ORTHO05D002366 8.5e-31 138.3 198 43.4
Gorai.009G231700 Gossypium raimondii HOM05D007577 ORTHO05D002366 1.1e-30 137.9 191 45.5
Gohir.A02G077300 Gossypium hirsutum HOM05D007577 ORTHO05D002366 1.9e-30 137.1 189 47.6
Glyma.02G212100 Glycine max HOM05D007577 ORTHO05D002366 2.5e-30 136.7 204 45.1
TAR376G0287 Trochodendron aralioides HOM05D007577 ORTHO05D002366 3.2e-30 136.3 199 45.2
VMungo0647G2546 Vigna mungo HOM05D007577 ORTHO05D002366 4.2e-30 136.0 204 45.1
CANSAT25G2895 Cannabis sativa HOM05D007577 ORTHO05D002366 2.1e-29 133.7 200 45.5
Glyma.14G179800 Glycine max HOM05D007577 ORTHO05D002366 2.7e-29 133.3 203 41.9
Nn5g29944 Nelumbo nucifera HOM05D007577 ORTHO05D002366 3.6e-29 132.9 181 43.6
RcHm_v2.0_Chr7g0237581 Rosa chinensis HOM05D007577 ORTHO05D002366 3.6e-29 132.9 201 44.3
CiPaw.08G053900 Carya illinoinensis HOM05D007577 ORTHO05D002366 4.7e-29 132.5 183 47.0
MD15G1381100 Malus domestica HOM05D007577 ORTHO05D002366 4.7e-29 132.5 219 43.4
Duzib116G0880 Durio zibethinus HOM05D007577 ORTHO05D002366 6.1e-29 132.1 187 48.1
Medtr5g065350 Medicago truncatula HOM05D007577 ORTHO05D002366 6.1e-29 132.1 196 46.4
Rhsim06G0074200 Rhododendron simsii HOM05D004661 ORTHO05D005827 8.0e-29 131.7 185 43.8
TAR625G1503 Trochodendron aralioides HOM05D007577 ORTHO05D002366 1.0e-28 131.3 192 43.8
TPR.G20891 Trifolium pratense HOM05D007577 ORTHO05D002366 1.4e-28 131.0 196 44.9
TWI12G1315 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 2.3e-28 130.2 208 43.3
Cpa.g.sc608.1 Carica papaya HOM05D007577 ORTHO05D002366 6.8e-28 128.6 213 41.3
Lalb_Chr17g0344401 Lupinus albus HOM05D007577 ORTHO05D002366 2.0e-27 127.1 198 43.4
Nitab4.5_0006922g0010 Nicotiana tabacum HOM05D007577 ORTHO05D002366 4.4e-27 125.9 179 47.5
Psat0s2495g0040 Pisum sativum HOM05D007577 ORTHO05D002366 7.5e-27 125.2 197 43.7
MD08G1192700 Malus domestica HOM05D007577 ORTHO05D002366 9.7e-27 124.8 218 39.0
Sed0009750 Sechium edule HOM05D007577 ORTHO05D002366 1.3e-26 124.4 182 45.6
arahy.Tifrunner.gnm1.ann1.15IZES Arachis hypogaea HOM05D007577 ORTHO05D002366 2.8e-26 123.2 188 41.0
Ciclev10002010m.g Citrus clementina HOM05D007577 ORTHO05D002366 2.8e-26 123.2 204 41.7
SalBow3G1297 Salvia bowleyana HOM05D007577 ORTHO05D002366 2.8e-26 123.2 185 41.6
Sed0013944 Sechium edule HOM05D007577 ORTHO05D002366 2.8e-26 123.2 184 42.9
Atru.chr13.1051 Acer truncatum HOM05D007577 ORTHO05D002366 2.4e-25 120.2 198 42.9
Eucgr.F02125 Eucalyptus grandis HOM05D007577 ORTHO05D002366 3.1e-25 119.8 192 41.7
Gorai.005G095300 Gossypium raimondii HOM05D007577 ORTHO05D002366 3.1e-25 119.8 196 43.4
Nn1g05500 Nelumbo nucifera HOM05D007577 ORTHO05D002366 3.1e-25 119.8 181 42.5
arahy.Tifrunner.gnm1.ann1.MEQI9D Arachis hypogaea HOM05D007577 ORTHO05D002366 7.0e-25 118.6 190 40.5
MSTRG.24626 Avicennia marina HOM05D007577 ORTHO05D002366 1.2e-24 117.9 181 38.7
Gohir.D02G084600 Gossypium hirsutum HOM05D007577 ORTHO05D002366 1.2e-24 117.9 196 43.4
Hund27003 Selenicereus undatus HOM05D007577 ORTHO05D002366 4.5e-24 115.9 200 41.5
MELO3C011066.2 Cucumis melo HOM05D007577 ORTHO05D002366 3.8e-23 112.8 187 41.7
Sc23g0000570 Simmondsia chinensis HOM05D007577 ORTHO05D002366 6.5e-23 112.1 193 40.4
CsaV3_2G030080 Cucumis sativus L. HOM05D007577 ORTHO05D002366 2.5e-22 110.2 187 40.6
TAR628G0666 Trochodendron aralioides HOM05D007577 ORTHO05D002366 5.5e-22 109.0 157 43.9
ATR0022G018 Amborella trichopoda HOM05D007577 ORTHO05D002366 7.2e-22 108.6 191 39.3
Lsat_1_v5_gn_1_2280 Lactuca sativa HOM05D007577 ORTHO05D002366 1.6e-21 107.5 197 38.1
Hma1.2p1_0620F.1_g190555 Hydrangea macrophylla HOM05D007577 ORTHO05D002366 2.1e-21 107.1 59 72.9
TWI56G0426 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 1.0e-20 104.8 202 37.1
ECA247G1746 Erigeron canadensis HOM05D007577 ORTHO05D002366 1.8e-20 104.0 201 37.8
Sc26g0000220 Simmondsia chinensis HOM05D007577 ORTHO05D002366 2.3e-20 103.6 183 39.3
Aqoxy6G01467 Aquilegia oxysepala HOM05D007577 ORTHO05D002366 5.2e-20 102.4 206 35.4
Migut.N00361 Erythranthe guttata HOM05D007577 ORTHO05D002366 6.8e-20 102.1 182 37.4
HanXRQChr04g0108601 Helianthus annuus HOM05D007577 ORTHO05D002366 6.8e-20 102.1 196 37.2
PSO541G0756 Papaver somniferum HOM05D007577 ORTHO05D002366 6.8e-20 102.1 89 51.7
Dinv44835 Davidia involucrata HOM05D007577 ORTHO05D002366 8.8e-20 101.7 146 43.2
Aqoxy5G01332 Aquilegia oxysepala HOM05D007945 ORTHO05D010049 2.0e-19 100.5 75 53.3
HPP92_002220 Vanilla planifolia HOM05D007577 ORTHO05D002366 5.7e-19 99.0 193 37.3
Zm00001eb401520 Zea mays HOM05D007577 ORTHO05D002366 2.2e-18 97.1 209 37.3
Prupe.1G527300 Prunus persica HOM05D007577 ORTHO05D002366 1.2e-16 91.3 185 37.3
Zm00001eb006590 Zea mays HOM05D007577 ORTHO05D002366 2.7e-16 90.1 182 36.3
HPP92_016372 Vanilla planifolia HOM05D007577 ORTHO05D002366 4.5e-16 89.4 88 47.7
PSO675G7602 Papaver somniferum HOM05D007577 ORTHO05D002366 5.9e-16 89.0 89 48.3
CiPaw.07G168400 Carya illinoinensis HOM05D007577 ORTHO05D002366 1.7e-15 87.4 163 43.6
Zm00001eb081390 Zea mays HOM05D007577 ORTHO05D002366 3.8e-15 86.3 72 51.4
Os04g0450000 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 5.0e-15 85.9 45 71.1
Os03g0187400 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 7.2e-14 82.0 53 62.3
Os02g0568600 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 1.6e-13 80.9 50 66.0
Zm00001eb244610 Zea mays HOM05D007577 ORTHO05D002366 2.1e-13 80.5 142 37.3
Zm00001eb423710 Zea mays HOM05D003505 ORTHO05D002366 3.6e-13 79.7 52 59.6
SEGI_40577 Sequoiadendron giganteum HOM05D007577 ORTHO05D002366 1.4e-12 77.8 186 33.9
ClCG08G011490 Citrullus lanatus HOM05D007577 ORTHO05D002366 1.2e-11 74.7 156 40.4
SMO274G0065 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 5.7e-11 72.4 46 65.2
SMO364G0458 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 3.7e-10 69.7 55 54.5
ATR0317G107 Amborella trichopoda HOM05D003505 ORTHO05D002366 8.3e-10 68.6 55 54.5
Oeu009617.1 Olea europaea HOM05D003505 ORTHO05D002366 1.4e-09 67.8 76 43.4
Oeu009618.1 Olea europaea HOM05D003505 ORTHO05D002366 1.4e-09 67.8 76 43.4
Sc02g0002860 Simmondsia chinensis HOM05D003505 ORTHO05D002366 1.8e-09 67.4 108 39.8
BraA09t42276Z Brassica rapa HOM05D003505 ORTHO05D002366 2.4e-09 67.0 49 53.1
DCAR_025091 Daucus carota HOM05D003505 ORTHO05D002366 2.4e-09 67.0 86 38.4
Oeu051914.1 Olea europaea HOM05D003505 ORTHO05D002366 2.4e-09 67.0 76 42.1
Zm00001eb244620 Zea mays HOM05D007577 ORTHO05D002366 2.4e-09 67.0 172 32.6
Gorai.008G107200 Gossypium raimondii HOM05D003505 ORTHO05D002366 5.4e-09 65.9 59 44.1
QL04p035739 Quercus lobata HOM05D003505 ORTHO05D002366 5.4e-09 65.9 70 44.3
GSVIVG01018208001 Vitis vinifera HOM05D003505 ORTHO05D002366 5.4e-09 65.9 50 52.0
Carub.0001s0016 Capsella rubella HOM05D003505 ORTHO05D002366 7.0e-09 65.5 49 53.1
Ca_07813_v3 Cicer arietinum L. HOM05D003505 ORTHO05D002366 7.0e-09 65.5 48 47.9
SMO367G0729 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 7.0e-09 65.5 62 50.0
CARHR000260 Cardamine hirsuta HOM05D003505 ORTHO05D002366 9.2e-09 65.1 49 53.1
Lalb_Chr03g0039921 Lupinus albus HOM05D003505 ORTHO05D002366 9.2e-09 65.1 50 46.0
Nn1g00971 Nelumbo nucifera HOM05D003505 ORTHO05D002366 9.2e-09 65.1 95 38.9
SEGI_11478 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 9.2e-09 65.1 48 56.2
BcaC07g42343 Brassica carinata HOM05D003505 ORTHO05D002366 1.2e-08 64.7 49 53.1
BcaNung05014 Brassica carinata HOM05D003505 ORTHO05D002366 1.2e-08 64.7 49 53.1
C08p54050 Brassica napus HOM05D003505 ORTHO05D002366 1.2e-08 64.7 49 53.1
BolC8t52915H Brassica oleracea HOM05D003505 ORTHO05D002366 1.2e-08 64.7 49 53.1
CSS0010517 Camellia sinensis var. sinensis HOM05D007577 ORTHO05D002366 1.6e-08 64.3 158 33.5
Sp1g00230 Schrenkiella parvula HOM05D003505 ORTHO05D002366 2.0e-08 63.9 49 53.1
Gohir.D12G098400 Gossypium hirsutum HOM05D003505 ORTHO05D002366 2.7e-08 63.5 74 39.2
AT1G02070 Arabidopsis thaliana HOM05D003505 ORTHO05D002366 5.9e-08 62.4 74 40.5
TPR.G28736 Trifolium pratense HOM05D003505 ORTHO05D002366 5.9e-08 62.4 47 51.1
Actinidia30808 Actinidia chinensis HOM05D007577 ORTHO05D002366 7.8e-08 62.0 94 50.0
Psat4g208960 Pisum sativum HOM05D003505 ORTHO05D002366 7.8e-08 62.0 71 36.6
Oeu043942.1 Olea europaea HOM05D007577 ORTHO05D002366 1.0e-07 61.6 153 35.3
CDE02G0489 Ceratophyllum demersum HOM05D000159 ORTHO05D000148 1.3e-07 61.2 92 32.6
CDE04G0168 Ceratophyllum demersum HOM05D020288 ORTHO05D002366 1.3e-07 61.2 57 42.1
Medtr8g005880 Medicago truncatula HOM05D003505 ORTHO05D002366 3.9e-07 59.7 74 36.5
AL1G10180 Arabidopsis lyrata HOM05D003505 ORTHO05D002366 5.0e-07 59.3 47 51.1
EL10Ac1g00817 Beta vulgaris HOM05D003505 ORTHO05D002366 5.0e-07 59.3 105 33.3
Migut.N01762 Erythranthe guttata HOM05D003505 ORTHO05D002366 5.0e-07 59.3 74 40.5
Psat4g209000 Pisum sativum HOM05D003505 ORTHO05D002366 5.0e-07 59.3 113 31.0
ATR0006G064 Amborella trichopoda HOM05D003505 ORTHO05D019556 6.6e-07 58.9 185 28.6
DCAR_025090 Daucus carota HOM05D003505 ORTHO05D002366 6.6e-07 58.9 103 32.0
Os04g0551600 Oryza sativa ssp. japonica HOM05D003505 ORTHO05D002366 8.6e-07 58.5 49 49.0
SEGI_29775 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 8.6e-07 58.5 100 34.0
EL10Ac1g01102 Beta vulgaris HOM05D007577 ORTHO05D002366 1.5e-06 57.8 183 33.9
HanXRQChr16g0519671 Helianthus annuus HOM05D003505 ORTHO05D002366 1.9e-06 57.4 103 32.0
SEGI_38843 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 2.5e-06 57.0 62 41.9
vmacro13460 Vaccinium macrocarpon HOM05D003505 ORTHO05D002366 2.5e-06 57.0 138 31.9
SEGI_22776 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 3.3e-06 56.6 62 41.9
SEGI_07305 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 5.6e-06 55.8 91 34.1


User provided reference genes

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